Peptoniphilus harei: NCTC13077_01115
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Entry
NCTC13077_01115 CDS
T05838
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
phar
Peptoniphilus harei
Pathway
phar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC13077_01115 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phar03019
]
NCTC13077_01115 (cshA)
03009 Ribosome biogenesis [BR:
phar03009
]
NCTC13077_01115 (cshA)
Enzymes [BR:
phar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC13077_01115 (cshA)
Messenger RNA biogenesis [BR:
phar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC13077_01115 (cshA)
Ribosome biogenesis [BR:
phar03009
]
Prokaryotic type
rRNA helicases
NCTC13077_01115 (cshA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
VEJ34559
LinkDB
All DBs
Position
1:complement(1160787..1162427)
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AA seq
546 aa
AA seq
DB search
MRFSDLNLSSELLRAIDDLGFESPSEVQEASIPIILEGCDVLAQAQTGTGKTASFGIPII
EGMEEDADDLQALVLVPTRELARQVSEELKKLAKYKKFINIVPIYGGADMGKQLRDLKKG
ASIVVGTPGRVMDHMKRKTIRLDVLKFLTFDEADEMFDMGFRDDMKTIIEKTNPDRQTLF
FSATFDNDIREFSRLYQRDPAKVIIEKKELTAEKIEQFYLELNRNMKTEILNRLILIHKP
KKSIIFCNTKRMVEALEVEIAQRGYKVDSLHGDMRQSSRDNVMKKFRNGTIDVLIATDVA
ARGLDVSDIDLVFNYDLPQQAEYYVHRIGRTARAGKKGASFTFVTSRDYPKFREIEKYAN
IKMEKMKLPTKADVERKSLDNLFDKVNKNILKAEDQASYTEVLNKLLAEGHSLYDISASL
LKLVNEATNKTKIKDLDRVDYGKKFEMSKKSKSSDRSRDKKSKGMKKIKGPKIFINKGKR
DGLDSREVIRLLGRHTDINPSDIGRINIMPNFSFVEVPKNMIKDAIRDLDGKKVKGKSLK
AEYSEK
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
ttgagatttagtgatttaaatttatctagtgaacttttgcgtgccattgatgatttgggt
tttgaaagtccatctgaggttcaagaggcaagcataccaataattttagaaggttgtgac
gtccttgctcaggctcagactggtactggcaagactgcatcttttgggattccaataatt
gagggaatggaagaagatgctgatgacttgcaggctcttgtccttgttcctacaagagag
cttgctagacaagtatctgaagaattaaagaaacttgcaaaatataaaaaattcattaat
atagttccaatttatggtggggctgacatgggcaagcaactgcgtgacttaaagaaggga
gccagcattgttgttgggactcctggcagggtcatggaccacatgaagagaaagactatt
aggcttgatgtactaaagtttttgacctttgatgaggctgacgagatgtttgacatgggc
tttagggatgatatgaagactattatcgaaaagaccaacccagacagacaaactttattt
ttctcggcaacttttgacaatgacataagggagttttctagactttatcaaagggatcct
gccaaagttattattgaaaagaaggaacttactgcagaaaagattgagcaattttacctt
gaactcaacaggaatatgaagacagagatcttgaataggcttatcctcatccacaagcca
aagaagtccatcatcttctgcaataccaagaggatggttgaggcccttgaagttgagatt
gcccaaaggggttacaaggttgactcccttcacggtgatatgcgtcagtcatcaagggac
aatgttatgaagaagtttaggaatgggactattgatgtcttgattgccactgatgttgcg
gctcgtggtctcgatgtgtctgatattgaccttgtatttaactacgaccttccacaacaa
gctgagtattatgttcacagaattggccgtacggcaagggctggcaagaagggggcatct
tttacttttgtaactagcagggactatcctaagtttagggagattgaaaagtatgcgaat
attaagatggaaaagatgaagcttcctactaaggctgatgttgagaggaaaagtcttgat
aatctctttgacaaggtcaacaagaatatcttaaaagcagaagaccaagcaagctacaca
gaagtattaaataagctcttggcagaggggcacagcctctatgatatctctgcttctctt
ctaaagttggtgaacgaggccactaacaagactaagatcaaggatcttgacagggttgac
tatggaaagaagtttgaaatgtccaaaaagtctaaatcctctgataggtccagggacaag
aaatccaagggaatgaagaagattaaggggccaaagatttttattaacaagggcaagagg
gacggtcttgactctcgtgaagtcattaggctccttggcagacacactgatatcaatcca
agtgacattggaaggatcaacatcatgccaaacttttcctttgttgaagtcccaaaaaat
atgattaaggatgccataagagaccttgatggcaaaaaggtcaagggcaagtccttaaag
gcagagtattctgaaaaataa
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