Peptoniphilus harei: NCTC13077_01149
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Entry
NCTC13077_01149 CDS
T05838
Symbol
rnjA
Name
(GenBank) Ribonuclease J 1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
phar
Peptoniphilus harei
Pathway
phar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC13077_01149 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phar03019
]
NCTC13077_01149 (rnjA)
Messenger RNA biogenesis [BR:
phar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC13077_01149 (rnjA)
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
HI0933_like
Motif
Other DBs
NCBI-ProteinID:
VEJ34608
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Position
1:complement(1192201..1193862)
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AA seq
553 aa
AA seq
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MRNTNKVKIIPLGGLHEIGKNLTLVEYRDDIIIIDCGMTFPEDEMLGIDVVIPDVTYLEN
NKHKIRGLVLTHGHEDHIGAIPYVLRKLDLDIYGTGLTIGLLENKLKEHRLSRDKLHVVS
AGDVVKLGKMEVEWINVNHSIPDACALAIKTPLGYVYHSGDFKVDFTPISGEPINLTRIA
EIGQKGVLAMIGESTNVLREGYTMSESKVGETFNRLFQSLSDNRIIIATFASNVHRVQQI
INSAEKYGRKVVLSGRSMVNVTETARKLGQFRVKKDTFVDIKDMDKYDDSEIVLITTGSQ
GEPMSALTRIAYGEHRKIQLTPNDAVILSATPIPGNENAVTKVINRLLERGAKVIYETLS
EIHVSGHACQEELKLILSLVKPKYFIPAHGEVRHLMKHAKIAQQMGMDERNIFIMENGNC
LEISQKSAKLVGDVPSGNILVDGLGVGDVGNIVLRDRRHLSEDGLIIVVISLTKEGKVVS
GPDIISRGFVYVRESEDLIEDAKNVVRKILNDDSRDNLKDWNGLKSDIRDNLRSYIFKNT
KRNPMILPIIMEV
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgagaaacacaaataaggtgaagataatcccactgggaggactccacgaaataggaaag
aatcttacactagttgaatatagagatgatattatcattatagactgtggtatgactttc
ccagaagacgaaatgcttggtattgatgttgtaataccagatgtaacttacctagagaac
aataagcacaaaataagaggacttgttctaactcacggtcacgaagaccatattggtgct
attccctatgtactgagaaagctagacctagatatttatggaactggtctaacaattgga
ctactagaaaacaaattaaaagaacatagactttcaagagacaaactccacgtagtaagt
gctggagatgttgttaaacttggcaagatggaagttgaatggataaatgtaaaccactct
attcctgatgcttgtgcccttgcaataaagacaccattgggatatgtttaccactcaggt
gactttaaggtagacttcactccaatcagtggagaacctattaacttaacaaggattgca
gaaattggacaaaagggcgtacttgccatgattggtgagtcaactaacgtcctaagagaa
ggttacacaatgagtgagtctaaggttggagaaacctttaatagacttttccaaagttta
tcagacaacaggattataattgcaacctttgcttccaacgttcacagggttcaacaaatt
attaactctgctgaaaaatatggcagaaaagttgtcttgtctggtaggtccatggtaaat
gtaacagaaacagcaagaaaacttggacaatttagggtcaaaaaagatacctttgttgac
atcaaggatatggacaagtatgacgacagtgaaattgtattaatcacaactggttcacaa
ggagagccaatgtcagctcttacaagaattgcctatggagaacatagaaaaattcaactc
acaccaaatgatgcagttatactttcagcaactccaataccaggaaatgaaaatgctgtt
acaaaggtaataaatagacttcttgaaagaggagcaaaggtaatttatgaaactttatca
gaaattcacgtttctggtcacgcttgtcaagaagagttaaaactaatactaagtctagta
aaaccaaaatactttatacctgcccacggagaagtaaggcaccttatgaagcacgcaaaa
attgcacagcaaatgggcatggatgaaagaaatattttcataatggaaaatggtaattgt
cttgagatttcacaaaagtctgcaaaacttgtgggagatgttccatcaggaaatatcctt
gttgacggacttggagtaggtgatgttggtaacatcgttctaagagacagaagacactta
tcagaagacggactaataattgttgttatctccttgacaaaagaaggcaaggttgtttca
ggtcctgacattatatcaagaggcttcgtttacgtaagagaatcagaagaccttattgaa
gatgcaaaaaatgttgttagaaaaatcttaaatgacgattcacgcgacaacttaaaggat
tggaatggacttaagtctgatatacgagataacttgagatcatatattttcaaaaacaca
aagagaaatcctatgattttaccaattattatggaggtttag
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