Phyllostomus hastatus (greater spear-nosed bat): 123805399
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Entry
123805399 CDS
T07912
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
phas
Phyllostomus hastatus (greater spear-nosed bat)
Pathway
phas03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phas00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123805399 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phas03021
]
123805399 (PCF11)
03019 Messenger RNA biogenesis [BR:
phas03019
]
123805399 (PCF11)
Transcription machinery [BR:
phas03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123805399 (PCF11)
Messenger RNA biogenesis [BR:
phas03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
123805399 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
123805399
NCBI-ProteinID:
XP_045673856
LinkDB
All DBs
Position
Unknown
AA seq
1684 aa
AA seq
DB search
MSEQTPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGSAPSKLHVSQIPPMAVKTPHQVPMQPEKSRPGPSLQIQDLKGTNRDPRLN
RMSQHSSHGKDQSHRKEFLMNPLNQSDIKTSKTIPSEKLNSSKQEKSKSGEKTKKELDQL
DSKSKSKSKSPSPLKNKLSHTKDLKNQESECPRVSDMSKRDPRLKKHLQDKTDSKDDDIK
EKRKTTEKKDKDEHMKSSEHRLVGSRNKIVNGIVQKQDTITDELEKQGTKPGRSSTRKRS
RSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTLTPKPGKIRPSGCKQSHMEEFMPPSRE
ERNAKRSTKQDIRDPRRMKKTEEDRPQEIANQHSTKSGTEPKENVENWQSSKSTKRWKSG
WEENKSIQQGDEHSKSPHQRHRESWPSTKGILSPRAPKQQHRLSVDANLQIPKELTLASK
RELLQKTSERLASGEITQDEFLLVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKPL
LSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASRN
SGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFNDR
FPLKRPRYDDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVTRDGPTKMIF
EGPNKLSPRIDGPPTPGSLRFDGSPGQMGGGGPLRFEGPQSQLGGGCPLRFEGPPGPVGT
PLRFEGPIGQGGGGGFRFEGSPGLRFEGSTGSLRFEGPGGQPVGGLRFEGHRGQPVGGLR
FEGPHGQPVGGLRFDNPRGQPIGGLRFEGGHGPSGPAIRFDGPHGQPAGGIRFEGPLLQQ
GVGMRFDGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEG
PVPGGGLRIEGPLGQGGPRFDGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQPGP
QRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGARFDNHPSQRLESVSFNQT
GPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYFDE
KNLQSSQFGNFGNLPAPITVGNIQGSQQVLTGVAQPVSFGQGQQFLPVHPQNLGAFVQNP
SGALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVAAQPSTEEEEDQNE
DQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRT
EKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQS
VPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCT
PSPSKTPVENPLNIMLNIVKNELQEPSESPKVKEEQIDTPPACTEESMATPTEIKTENDP
VESV
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtactgcgggggcccgggaggacgcctgtcgg
gattatcagtcgtcactcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaacgttggacgagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaagttacgttct
acatgggatgaaatattcccattgaagaaactttatgccctggatgtcagagtcaattcg
ttagatcctgcttggcctattaaacctctaccccccaatgtgaatacatctagcatccat
gtgaatcctaaatttttaaataaatcgcctgaagagccttcaacacctggcacagtggtc
agttcccctagcatctccactcctccaattgtacctgatatacaaaagaatcttacccaa
gaacaactaataaggcagcagttactggcaaaacaaaaacagttattagaacttcagcag
aaaaagctggagcttgaactagagcaagctaaagcacaattggcagtttctcttagtgtt
cagcaggagacatccaacttaggtcctggatctgcaccatccaaactacatgtttcacaa
attcctcctatggcagttaaaactccccatcaggttcctatgcaacctgagaaaagccgt
ccaggtccatccttacaaattcaggatttgaaaggaacaaaccgggatccccgtcttaat
aggatgagtcaacattcttctcatggaaaagatcaaagtcacagaaaagaattcctgatg
aacccattaaaccaatctgatattaagacaagtaaaactataccctctgaaaaactaaat
tcatccaaacaagaaaaaagtaaatcaggtgaaaaaaccaagaaagaacttgaccaatta
gattctaaatctaaatctaaatctaaatcaccatcacctttgaaaaacaagttatcccac
acaaaagacttgaaaaatcaagaatctgaatgcccaagggtgtctgatatgagcaagaga
gatccaagattaaaaaaacaccttcaggataaaactgatagcaaagatgatgatataaaa
gagaagagaaaaactacagaaaaaaaggataaagatgagcatatgaaatcatctgaacac
agactggttggaagtagaaataaaattgttaatggcattgtacaaaaacaggatacaata
acagacgaattggagaaacagggaacaaaaccagggagatcaagtactagaaagcgatca
agatcacgatcacctaagtctcgatcaccaattatacattctcctaagagaagagacagg
cggtcacccaaacgaaggcaaaggagtatgtctccaaccttgacacccaaacctggaaag
attcgcccatcgggatgtaagcagtcacatatggaagaatttatgccaccttccagggaa
gaaagaaacgctaagagaagtactaaacaggatattcgagatccaagacgaatgaaaaag
actgaagaggaccgaccacaagaaattgcaaatcagcattctacaaaatcaggcactgaa
ccaaaagagaatgtagaaaattggcaaagttccaagtctaccaaaagatggaaatctggt
tgggaagaaaataaaagcatacaacagggtgatgaacatagtaaatctcctcatcaaaga
catagggaaagctggccaagcactaaaggaatcttgtcacctcgagccccaaagcagcag
catcgattaagtgtagatgccaatcttcagattcctaaagagttaactcttgcaagcaaa
agagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggatgag
ttccttcttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacataga
tgcaatgtacgcgatagtcctacagaagaaaataaaggtggattaaaaaagaaacctctc
ttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacaggtt
cagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttgact
gatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtaggaat
agtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttctcct
atatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaagacat
gacgagcaagtctctgctaaaggtgtacgagaagagcagagatcaccattcaatgatcgt
tttccacttaagcgacctagatatgacgattcagataaaccatttgtagatagcccagca
tcacgatttgccggccttgatacaaatcagcgacttacagctttagctgaagacagacca
ttatttgatggacctagtaggccatcagtaaccagagatggcccaaccaagatgattttt
gaaggacctaataaattaagccctagaattgatggacctcctacaccaggttctcttcgg
tttgatgggtcacctggacagatggggggaggtggccctttgagatttgaaggaccacaa
agtcagctaggaggcgggtgtcctttgagatttgaaggtcctccaggaccagtagggaca
cctttgcggtttgaggggccaattggtcaaggaggtggaggtggttttcggtttgaaggt
tcccctggtctgaggtttgagggatctacaggtagtctaagatttgaaggaccagggggc
cagcctgtgggtggtctcaggtttgagggacaccggggtcaacctgtgggtggtctaagg
tttgagggacctcatggtcaacctgtgggtggacttagatttgataatccccgaggtcag
cctataggtggacttagatttgaggggggtcatggtccatcaggacctgcaattaggttt
gatggaccccatggtcagccagcaggtgggatcagatttgagggtcctttgctacagcag
ggagttgggatgaggtttgatggcccccatggtcagtcagtagctggtctgaggtttgaa
ggacaacataatcaacttggtgggaaccttaggtttgagggtccacatggtcaaccagga
gtagggatcaggtttgagggacctttagtccaacaaggaggtggaatgaggtttgagggt
cctgtgccaggaggtggcctgagaattgaagggcctctgggtcaaggtggtccaagattt
gatggttgtcatgctttaaggtttgatgggcagcccggtcagccatcactcttaccaaga
tttgatggactacatggtcaaccaggtcctagatttgaaaggactggtcagccaggccca
cagagatttgatggaccacctggacagcaggttcaaccaagatttgatggtgttcctcaa
agatttgatggtccacaacaccagcaagcatcaaggtttgatattccccttggtcttcaa
ggagcacgatttgacaatcatccttcacaaaggcttgaatcagtttctttcaaccagact
ggtccatataacgatccacctggcaatgcttttaatgctccatcccaaggactgcagttc
caaagacatgaacaaatatttgattcacctcaaggaccaaattttaatggaccacatggc
cctggaaaccagagtttctccaatccccttaacagagcgtctggacactattttgatgaa
aaaaatcttcagagttctcaatttggaaattttggtaatttacctgctccgataactgta
ggaaatattcagggatctcaacaggttctgactggtgttgctcagccagtatcgtttggc
caaggacaacaatttttaccagttcatccacaaaatcttggagcgtttgttcagaatcct
tcaggagcccttcctaaggcataccctgacaatcatctcagtcaggtggatgtaaatgaa
ttattttcaaaactgcttaaaacaggaattctcaaattgtcccagcctgattcagctaca
acacaagtaaatgaagttgctgcgcagccttccactgaagaggaggaagatcaaaatgaa
gatcaagatgttccagatcttaccaattttacaattgaagaattgaaacaacgttatgat
agtgttataaatcgactgtacactggtattcagtgttactcttgtggaatgagatttaca
acatcacagacagatgtatatgcagatcacttggactggcattatcggcaaaacagaact
gaaaaagatgttagcagaaaagtcactcatagacgttggtactacagtttaacagactgg
atagaatttgaggaaatagccgatttggaagaacgtgcaaagagccagttttttgaaaag
gtgcatgaagaagttgtgctcaaaactcaggaagctgctaaggaaaaggagttccagagt
gtacctgcagggccagctggagcagttgaaagttgtgaaatctgtcaagaacaatttgaa
caatactgggatgaagaagaggaggaatggcatttaaaaaatgctattagagtagatgga
aagatttatcatccatcatgttatgaagattatcaaaatacatcttcatttgattgtaca
ccatctcccagcaagacaccagttgaaaaccctttgaacattatgttgaacattgtcaaa
aatgaattgcaggaaccctctgaaagtcccaaagttaaggaagaacaaatcgatacccca
ccagcgtgtacagaggaaagcatggcaacacccactgaaattaaaacagaaaatgatcca
gttgagtcagtttaa
DBGET
integrated database retrieval system
