Phyllostomus hastatus (greater spear-nosed bat): 123828222
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Entry
123828222 CDS
T07912
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
phas
Phyllostomus hastatus (greater spear-nosed bat)
Pathway
phas03013
Nucleocytoplasmic transport
phas03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phas00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123828222 (UPF1)
03015 mRNA surveillance pathway
123828222 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phas03019
]
123828222 (UPF1)
Enzymes [BR:
phas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
123828222 (UPF1)
5.6.2.5 RNA 5'-3' helicase
123828222 (UPF1)
Messenger RNA biogenesis [BR:
phas03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
123828222 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
123828222 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
123828222
NCBI-ProteinID:
XP_045708918
LinkDB
All DBs
Position
Unknown
AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGPG
VPVGAGAGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLP
VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVI
IWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQLGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKGKTGRGGRQKNRFGLPGPSQTNLPSSQASQDVASQPFSQGALTQGYISMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcaccttcctggacactgaggag
gccgagcttctcggcgccgacacgcagggctccgagttcgagttcaccgacttcactcta
cccagccagacgcagacgcctcccggaggccccggtggccccggaggtggcggcccgggg
gtcccggtcggcgcgggtgcgggcgctgcggcgggacagctcgatgcccaggttggagga
cctgagggcatcctgcagaatggggccgtggatgacagcgtggccaagactagccagttg
ctggccgagttgaacttcgaagaggatgaagaggatacctattacacaaaggacctaccg
gtacatgcctgcagttactgcggaatacatgatcctgcttgcgtggtttactgtaatacc
agcaagaagtggttctgtaatgggcgtggaaatacttctggcagccacattgtaaatcac
cttgtgagggcaaaatgcaaagaggtgactctgcacaaggatgggccccttggggagacg
gtcctggagtgttacaactgtggctgccgcaacgtcttcctcctcggcttcatccccgcc
aaggctgactctgtggtggtgctgttgtgcaggcagccctgtgccagtcagagcagcctc
aaggacatcaactgggacagctcgcagtggcagcccctgatccaggatcgctgcttcctg
tcctggctggtcaagatcccttcagagcaggagcagctgcgggcccggcagattactgcc
cagcagatcaacaagcttgaggagctgtggaaggagaatccttctgctaccttggaggat
ctggagaagccgggggtggacgaggaaccgcagcatgtcctcctgcggtatgaggatgcc
taccagtaccagaacatattcgggcctctggtcaagctggaggctgactatgacaagaag
ttgaaagagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttacccaagactgactctggtaatgaggatttagtcata
atttggttaagagacatgcggctcatgcagggggatgagatatgcctgcggtacaaaggg
gatctggctcccctgtggaaagggatcggccacgtcatcaaggtccctgataattatggt
gatgaaattgccattgagctgcggagcagtgtgggtgcacctgtggaggtgacacataac
ttccaggtggattttgtgtggaaatccacctcatttgataggatgcagagtgcactgaag
acctttgctgtggatgagacctcggtgtcgggctatatctaccacaaactgctcggccat
gaggtggaggatgtgatcatcaagtgccagctgcccaagcgcttcacagcacaggggctg
cctgacctcaaccactctcaggtttacgccgtgaagactgtgctgcagagaccactgagc
ctgatccagggaccaccaggaacagggaagactgtgacctcagccaccattgtctaccac
ctggcacggcagggcaacgggcctgtgctcgtctgtgctccaagtaacatagctgtggat
cagctgactgagaagatccaccagacaggactgaaagtcgttcggctttgcgctaagagc
cgtgaagccatcgattccccggtgtcattcctggccctgcacaaccagatcaggaacatg
gatagcatgccagagctccagaagctgcagcagctcaaggacgagactggggagctgtcg
tctgctgatgagaagcgataccgagccctgaagcgcacagctgaaagggagctgctcatg
aacgcagatgtcatctgctgcacgtgtgtgggtgcaggagaccccaggctcgccaagatg
caattccgctccattctaatcgacgagagcacccaggccacagagccagagtgcatggtc
cctgtggtccttggagccaagcagctgatcctcgtgggtgaccactgccagctgggccct
gtggtgatgtgcaagaaggcagccaaggcagggctgtctcagtcgctgtttgaacgcctg
gtggtgctgggcattcgtccaatccgcctgcaagtccagtatcggatgcaccctgcactc
agtgccttcccatccaacatcttctatgagggatctctgcagaacggtgtcactgcagcg
gatcgagtgaagaaggggtttgacttccagtggccccaacctgataagccaatgttcttc
tatgtgacccagggccaggaagagatagccagctcgggtacctcctacctgaacaggacg
gaggctgcaaacgtggagaagatcaccacgaagctgctgaaggcaggcgccaagccggac
cagattggtatcatcacaccttatgagggccagcggtcctacctggtgcagtacatgcag
ttcagtggctccctgcacaccaagctataccaggaggtggaaattgccagcgtggatgca
ttccagggacgtgagaaggacttcatcatcctctcctgcgtgagagccaacgagcaccaa
ggcattgggtttttaaacgaccccaggcggcttaacgtggccttgacccgagcaagatat
ggggtcatcattgtaggcaaccccaaggctctgtccaagcagccactgtggaaccacctg
ctgaattactataaggagcagaaagtgctggtggaggggcccctgaacaacctgcgggag
agtctcatgcagttcagcaagccccggaagctggtcaacaccatcaaccctggagcccgc
ttcatgactacagccatgtacgatgcccgggaggccatcatcccaggatcagtctacgac
cggagcagccagggacgtccctcaaacatgtacttccagacccacgaccagcttggcatg
atcagtgctggccccagccacgtggccgccatgaacattcccatccccttcaacctggtt
atgccaccaatgccacccccagggtactttgggcaggctaatgggccagctgcaggccgg
ggcacccccaaaggtaagacgggtcgtggaggacgtcagaagaaccggtttgggcttcct
gggcccagccagacgaacctgcccagcagccaggccagccaggatgtggcatcgcagccc
ttctctcagggtgccctgacgcagggctacatctccatgagccagccctcccagatgagc
cagcctggcctctcccagcctgagctgtcccaggacagttaccttggtgatgagtttaag
tcccagattgatgtggcgctgtcgcaagactctacgtaccagggagagcgggcataccag
catggtggagtgacggggctgtcccagtactag
DBGET
integrated database retrieval system
