Proteus hauseri: PH4a_05505
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Entry
PH4a_05505 CDS
T05854
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
phau
Proteus hauseri
Pathway
phau03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phau00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PH4a_05505 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phau03021
]
PH4a_05505 (rpoC)
03400 DNA repair and recombination proteins [BR:
phau03400
]
PH4a_05505 (rpoC)
Enzymes [BR:
phau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PH4a_05505 (rpoC)
Transcription machinery [BR:
phau03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PH4a_05505 (rpoC)
DNA repair and recombination proteins [BR:
phau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PH4a_05505 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QAV22827
LinkDB
All DBs
Position
complement(1202053..1206279)
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTSLERGQILTEEQYLDALEEFGDEFDAKM
GAEAVQNLLQSMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFIQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRDCINAKGEGMVLSGPKEAERVYRAG
LASLHARVKVRITEEIRDGEGNVTTNTSLRDTTVGRAILWMIVPKGLPYELVNQPLGKKA
ISKMLNTCYRVMGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPAKKAEIIAEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTETVINRDGVEEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTESDCGTTEGVMMTPVIEGGDVKEPLRERVL
GRVAAEDILKPGTADILVPRNTLLNEKLCDLLEENSVDSVKVRSVVTCNTDFGVCANCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVRNKGTLKL
FNAKFIANTAGKLVITSRNTELRLIDEFGRTKESYKVPYGAQLSKGDGEAVNGGETVANW
DPHTMPVVSEVSGIIRFADMVDGQTIIRQTDELTGLSSLVVLDSAERTGSGKDLRPALRI
TDAQGKDVLIPNTDMPAQYFLPGKAIVQLDDGIAINAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVISDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKVTIENAGSSEFLEGEQVEYARVKVSNRVLEDDGKVPATYARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGFAYHQDRIKRRHQQLPTD
ETETTVSADEASANLAELLNAGFGGFKE
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaaccaagaccgaagagtttgatgcgatc
aaaattgctctggcatcaccggacatgattcgttcatggtcattcggtgaagtgaaaaag
ccagaaacaattaactaccgtacgttcaaaccagaacgtgacggtcttttctgtgcccgt
attttcggaccagtaaaagattacgaatgtttgtgtggtaaatacaaacgtttaaaacac
cgtggtgttatttgtgagaagtgtggcgttgaagttacacaaactaaagttcgtcgtgaa
cgtatgggtcacatcgaattagcttctcctgtagcgcacatctggttcttaaaatcattg
ccgtcccgtatcggtctgctgctggatatgccactgcgcgatattgaacgtgtgctgtat
tttgaatcttacgttgttgttgaaggcggtatgactagccttgaacgcggtcaaatctta
acagaagagcaatacctcgacgcattagaagaattcggtgacgaatttgatgcgaagatg
ggtgcagaagctgttcagaacttgttacagagtatggatctggaacaagagtgtgaaacg
ttgcgtgaagagttaaatgagactaactctgaaactaaacgtaagaaactgaccaaacgt
atcaagttacttgaagcattcattcaatcaggcaataaaccggaatggatgatcttaact
gtactgcctgtgttaccaccagacttacgtccactggttccacttgatggtggtcgtttt
gcgacatctgacctgaatgatttatatcgtcgcgtgatcaaccgtaacaaccgtttaaaa
cgcctgcttgatttagcagcgccagacattatcgtacgtaacgaaaaacgtatgttgcaa
gagtctgtggatgcgttattagataacggtcgtcgtggtcgtgcaattacaggttctaac
aaacgtcctctgaaatctttggctgatatgatcaaaggtaaacaaggtcgtttccgtcaa
aacctgttaggtaaacgtgttgactattctggtcgttctgtaatcaccgttggtccatac
ctgcgtctgcatcagtgtggtctaccgaagaaaatggctcttgaattattcaaaccattt
atttacggaaaactggaaacccgtggtttagcgacaacgattaaagccgctaaaaaaatg
gttgagcgtgaagaagcggttgtttgggatatcttagatgaagttatccgtgaacaccca
gttatgttaaaccgtgcaccaacacttcaccgtttaggtattcaggcatttgaacctatc
cttatcgaaggtaaagctattcagttacatccactcgtttgtgcggcatataacgccgac
ttcgatggtgaccaaatggcggttcacgtaccactgacattagaagcacagttagaagct
cgtgcgctgatgatgtcaacaaacaatatcctgtctccagcaagtggtgacccaatcatc
gttccttcacaggacgttgtattaggtctgtactacatgacgcgtgactgcattaatgcc
aaaggtgaaggcatggtgctcagtgggccaaaagaagcagaacgcgtttatcgcgctggc
ttagcttcactgcacgctcgcgtaaaagtacgtattactgaagagatcagagatggcgaa
ggtaacgtcactacaaatactagcttaagagacacgacagttggtcgcgctattttgtgg
atgatcgtacctaaaggtctaccttatgagttggttaaccaaccattaggtaaaaaagcc
atttctaaaatgcttaatacctgttaccgcgtaatgggcttgaagccaacggttattttt
gctgaccaaatcatgtataccggttttgcttacgctgcacgttctggtgcctctgtaggt
atcgatgacatggtcatccctgcgaaaaaagcagagatcattgcagaagcagaagcggaa
gttgcagaaattcaggaacagttccaatccggtctggtaacagcgggcgaacgttataac
aaagtcatcgatatttgggctgcggcgaatgagcgcgtagcgaaagcgatgatggaaaac
ctgtctacagaaactgtaattaaccgtgatggcgttgaagaacaacaagtatcgtttaac
agcatctttatgatggctgactccggtgctcgtggttctgctgcacagatccgtcagtta
gcaggtatgcgtggtctgatggctaaaccagatggttcaatcatcgaaaccccaatcaca
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctcaactcacggtgctcgt
aaaggtttggcggataccgcactgaaaacagcaaactccggttacttgactcgtcgttta
gttgacgttgcacaagacttagtcgtaacagaaagtgactgtggtactaccgaaggtgtc
atgatgactccggtcatcgaaggtggtgatgttaaagaaccactacgtgaacgtgtatta
ggccgtgtggctgcagaagatattctgaaaccaggtaccgctgatattcttgttccacgt
aacacactgcttaacgaaaaactgtgtgacctgttagaagaaaactcagttgacagcgtt
aaagttcgttcagttgtaacctgtaacacagactttggtgtgtgtgctaactgttatggt
cgtgaccttgctcgtggtcatatcatcaacaaaggtgaagctatcggtgttattgcggct
cagtcaatcggtgagccgggtacacagttaacgatgcgtacattccacatcggtggtgcg
gcatctcgtgcggcggcagaatcaagcattcaagtacgtaacaagggtactttgaaactg
tttaacgctaaatttatcgctaatacagcaggtaaattagttatcacttctcgtaacact
gaattacgtcttattgatgaattcggtcgtacgaaagagagctataaagtaccttacggt
gctcagctgtctaaaggtgatggtgaagctgttaacggtggcgaaacagttgcaaactgg
gatccgcatacaatgccagttgtgagtgaagtctctggtatcattcgttttgctgacatg
gttgatggtcaaaccatcattcgtcagactgatgaattaacaggtctttcttcactggtt
gttctggattcagcagagcgtacaggtagcggtaaagatttacgtccagcattgcgcatc
accgatgcacaaggtaaagatgtattaatcccgaatactgatatgccagctcaatacttc
ctgccaggtaaagctatcgttcaattagacgatggtattgcaatcaacgcaggtgatact
ttagcgcgtattccacaagaatctggcggtactaaagatatcaccggtggtctgccacgc
gttgctgacctgtttgaagctcgtcgtcctaaagagcctgcaattcttgctgaaatcagc
ggtattgtatcgtttggtaaagagacgaaaggcaaacgtcgcctggttatctctccatta
gatggtagcgacgcatacgaagagatgatccctaaatggcgtcagcttaacgtatttgag
ggtgaggttgtggaacgcggtgatgtaatctccgatggtccagaatcaccacacgacatc
ctgcgcttacgtggtgttcatgcggtaactcgctatatcactaatgaagtacaggaagtt
taccgcttacaaggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ctacgtaaagtcactatcgagaatgcaggaagttctgaattcctcgaaggtgaacaagtt
gaatacgctcgcgttaaagtatcgaaccgtgttcttgaagatgatggaaaagtaccagcg
acttatgctcgtgacctattaggtatcactaaagcatcactggcaactgaatcctttatc
tcagcagcgtcgttccaagaaacaacgcgcgttctgacagaagcagctgtcgcgggtaaa
cgtgacgaattacgtggcttaaaagagaacgtaattgttggtcgtttaatcccagcaggt
actggttttgcttaccatcaggatcgtatcaaacgtcgtcatcagcagttaccaactgat
gaaactgaaacaacagtcagcgctgatgaagcatctgctaacttagcagaattactgaat
gctggtttcggtggcttcaaagaataa
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