Phenylobacterium parvum: HYN04_03865
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Entry
HYN04_03865 CDS
T05485
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
phb
Phenylobacterium parvum
Pathway
phb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
phb00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HYN04_03865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phb03021
]
HYN04_03865
Transcription machinery [BR:
phb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HYN04_03865
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AWM76966
UniProt:
A0A2Z3HS14
LinkDB
All DBs
Position
816812..818743
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AA seq
643 aa
AA seq
DB search
MMSNTPAETEAAETPSSDGPLLDLTDAGVKKFIKQAKARGYVTMDELNKVLPSEEVTSEA
IEDTLAMLSEMGVNVVEAEEDAEGGEVAVREETAVVETQKEAAYDRTDDPVRMYLREMGS
VELLSREGEIAIAKRIEAGRDTMIRGLCESALTFEAIMVWREELGTGRILLREVIDLEQT
YGGVNAAAEALAESAESAEVTEDGEAAAKAEGDDDDDFDDGAGPTISAMESELREGVMLT
LDAIAAEFDAFRSLQEKLVGKRLKGEDLSEGDRASHSAASGAIVQHLKTLKLNNNRIEAL
VEQLYAINKRLVGLEGRLMRLADSYGIARQEFLKTYLGSELDPTWSDKVKALGVRWTKFA
ENEAGQVLAIRQEIASLATESGVPIDEYRRIVQTVQKGEREARQAKKEMVEANLRLVISI
AKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI
RIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETP
IGDEEDSHLGDFIEDKNAVLPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTD
HTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDS
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
ttgatgagcaacacccccgccgagaccgaagccgccgagaccccttccagcgacgggccg
ctgctcgatctcaccgacgccggcgtcaagaagttcatcaagcaggccaaggcccgcggc
tacgtcaccatggacgagctgaacaaggtcctgccgtccgaggaggtcacctccgaggcg
atcgaggacaccctggccatgctgtccgagatgggcgtcaacgtggtcgaggccgaagag
gacgccgagggcggcgaggtggcggtccgcgaggaaaccgccgtcgtcgagacccagaag
gaagccgcctacgaccgcacggacgatcccgtgcgaatgtaccttcgcgagatgggctcg
gtggagctactctcccgcgagggcgagatcgcgatcgccaagcgcatcgaggccggccgc
gacaccatgatccggggcctgtgcgagagcgccctgaccttcgaggccatcatggtctgg
cgcgaggagctgggcaccggccgcatcctcctgcgcgaggtcatcgacctggagcagacc
tacggcggggtcaacgccgccgccgaggccctggccgagtccgcggagtccgccgaggtg
accgaggacggcgaggccgctgcgaaggccgagggcgacgatgacgacgacttcgacgac
ggagccggtccgaccatcagcgccatggagagcgagctgcgcgaaggcgtcatgctcacc
ctcgacgccatcgccgccgagttcgacgccttccggtccctgcaggagaagctggtcggc
aagcggctgaagggcgaagacctgtcggagggcgaccgcgcctctcactcggccgccagc
ggcgccattgtccagcacctcaagaccctgaagctgaacaacaaccgcatcgaggccctg
gtcgagcagctctacgccatcaacaagcgactggtcggcctggaaggccggctgatgcgc
ctggccgacagctacggcatcgcccgccaggagttcctcaagacctacctgggctccgag
ctcgacccgacctggtcggacaaggtcaaggccctgggcgtccgctggaccaagttcgcc
gagaacgaggcgggccaggtgctggccatccgccaggagatcgcctccctcgccacggaa
tccggcgtgccgatcgacgagtaccggcgcatcgtccagaccgtccagaagggcgagcgc
gaggcccgtcaggccaagaaggagatggtcgaggccaacctgcgcctcgtcatctccatc
gccaagaagtacacgaaccgcggcctgcaattccttgacctcattcaggaaggcaacatt
ggcctcatgaaggccgtggacaagttcgagtaccgccggggctacaagttctccacatac
gccacctggtggatccggcaggccatcacccggtccatcgccgaccaggcccggaccatc
cgcatcccggtgcacatgatcgagacgatcaacaagatcgtccggacctcgcgccagatg
ctgcacgagatcggccgggagccgacgcccgaggaactggccgagaagctggccatgccc
ctggagaaggtccgcaaggtcctgaagatcgccaaggagcccatcagcctcgagacgccg
atcggcgacgaggaggactcgcacctgggcgacttcatcgaggacaagaacgccgtcctg
ccgatcgacgccgccatccagtccaacctgcgcgagaccacgacgcgggtcctggcctcc
ctgaccccccgcgaggagcgggtcctgcgcatgcgcttcggcatcggcatgaacaccgac
cataccctcgaggaggtgggccagcagttcagcgtgacccgcgagcggatccgccagatc
gaggccaaggccctgcgcaagctcaagcaccccagccgcagccgcaagctgcgcagcttc
ctcgacagctag
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