Phenylobacterium parvum: HYN04_05155
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Entry
HYN04_05155 CDS
T05485
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
phb
Phenylobacterium parvum
Pathway
phb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYN04_05155 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phb03019
]
HYN04_05155 (rnr)
03016 Transfer RNA biogenesis [BR:
phb03016
]
HYN04_05155 (rnr)
Enzymes [BR:
phb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HYN04_05155 (rnr)
Messenger RNA biogenesis [BR:
phb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HYN04_05155 (rnr)
Transfer RNA biogenesis [BR:
phb03016
]
Prokaryotic type
tRNA degradation factors
HYN04_05155 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
Motif
Other DBs
NCBI-ProteinID:
AWM77202
UniProt:
A0A2Z3HPJ5
LinkDB
All DBs
Position
complement(1068171..1070474)
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AA seq
767 aa
AA seq
DB search
MARPRPPRRPHAAPRSGSRPPQGLPDRETLLAFIRESGEADRSDIARAFGLRGSDRIALR
DMLRDLQDSGELGRRGRKGVALPGDLPPVGVVEVVERDADGELMVRLVKGEDTPLVRLAP
DRSEAASGAPGLGDRLLVRFEGLESGETEARLIKRLGAAVHRVLGVVRKSARQVRVEPVD
RRSRDQVLIEGLAPPDLRDGDLVVARLVPGGRRFGLHRGEILERVGREDDPRAASLIAIH
AHGIPTGFPEAAETEAEAAQEADLKGREDLRDLPLVTIDPPDARDHDDAVFAEPDGDASN
PGGWIVWVAIADVAAYVRPGSALDRTAREKGNSVYFPDRVEPMLPERLSAGLCSLRAGEN
RACLAVRMVFDASGRKTGHRFVRGLMRSAAKLSYEQAQAAIEGRTDEVTGPLLDRVLKPL
YAAYAVMLDARRRRSPLAIESPERRILMDSEGRIASIRTRTVLPAHQLIEEMMIQANVCA
AQTLEARKTPLIYRVHDTPSLEKVHALADFLGTLGLPWSKGEAPRTERFNRLLEETRESP
SAAIINEVVLRSQMQAIYDTDNIGHFGLNLDRYAHFTSPIRRYADLIVHRGLIRALGLGD
DGLTDRDIAQLKGTAEMITAAERRAMAAERDAIDRYVAAFLADRVGATFTGRISGVTRFG
LFIRLDETGADGLIPISRLGGEFFVHDETAHALVGERSGAHWPLGLPVEVRLVEATPVTG
GLLFDMLSDPVKGAPPPPRGRGPKRPGAVDARRRGGPPPGVRKGKRR
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atggccagaccccgcccgccccgccggccccacgccgccccccgctccggcagccgcccg
ccccagggcctgccggaccgcgagaccctgctcgccttcatccgcgagtccggcgaagcg
gaccgctccgacatcgcccgggcgttcggccttcgcggctccgaccgcatcgccctgagg
gacatgctgcgggatttacaggactccggtgagctgggacgccgcggccgcaagggcgtg
gccctgcccggcgacctgccgcccgtgggggtggtcgaagtggtggagcgtgacgccgac
ggcgagttgatggtgcggctggtcaagggcgaggatacgcccctcgtgcgcctggcgccc
gatcgcagcgaggcggcgtcgggcgcgccgggcttgggcgacaggttgctggtgcgtttc
gagggcctggagtccggcgagaccgaggcccggctgatcaagcgcctgggcgccgccgtt
caccgggtgctcggcgtggtgcgcaagtcggcccgacaggtgcgtgtggaacccgtcgac
cggcgctctcgcgaccaggtgctgatcgagggtctggcgccgccggacctgcgcgacggc
gacctcgtcgtcgcccgcctggtcccgggcggacgccgcttcggcctacacagaggagag
atcctcgagcgcgtggggcgcgaggacgacccgcgggccgcctccctgatcgccatccac
gcccatggcattcccaccggcttccccgaagccgccgagaccgaggcggaggctgctcag
gaggcggacctcaagggccgcgaggacctgcgcgacctgcccctcgtgactatcgatccg
cccgacgcccgggaccacgatgacgccgtcttcgccgagcccgatggggacgcgtccaac
cccggcggctggatcgtctgggtggcgatcgccgacgtcgccgcctatgtccggcctgga
tcagccttggaccggaccgcccgggagaagggcaacagcgtctatttccccgaccgggtg
gagcccatgctgcccgaacggctctccgccggactttgcagcctcagggcgggtgagaac
cgggcctgcctggcggtgaggatggtctttgacgcctctggccggaaaacgggccaccgc
ttcgtgcggggcctgatgcgctcggcggccaagctgtcctacgagcaggcccaggccgcc
atcgaggggcggacggacgaggtcaccggccccctgctggaccgggtgctgaaacccctc
tacgccgcctatgcggtgatgctggacgcccggcgccggcgctctcccctcgcgatcgag
agccctgaacggcgcatccttatggactccgaggggcggatcgcctccatccggacccgc
acggtgctgccggcgcaccaattgatcgaggagatgatgatccaggccaatgtctgcgcc
gcgcagacgcttgaggcccggaagacgcccctgatctatcgcgtccacgacacgcccagc
ctggaaaaggtgcacgccctggccgacttcctgggcaccctgggcctgccctggtccaag
ggcgaggcgcctcggacggaaaggttcaaccgcctcctcgaggagacgcgcgagagcccc
agcgccgccatcatcaacgaggtcgtcctgcgcagccagatgcaggcgatctatgacacc
gacaacatcggccacttcggcctgaacctggaccgctacgcccacttcacctcgcccatc
cgccggtacgccgacctgatcgtccaccggggcctgatccgcgccctgggtctcggcgac
gacggcctgacggaccgcgacatcgcccaactcaagggcaccgccgagatgatcaccgcc
gccgagcgtcgggccatggcggccgagcgcgacgccatagaccggtatgtggccgccttc
ctggcggaccgcgtcggcgcgaccttcaccggccggatcagcggcgtcacccgtttcgga
ctgttcatccggctggacgagaccggggcggacggccttatcccgatctcgcgcctgggc
ggcgagttcttcgtccacgacgagaccgcccatgccctggtgggcgagcggtcgggcgca
cactggcccctgggtctgcccgtcgaggtgcggctggtggaggcgacgccggtcactggc
ggcctgctcttcgacatgctgagcgatccggtcaagggcgcccctcccccgccccgggga
cggggtccgaagcgtcccggcgcggtggatgcccgccgaaggggcggcccgccgccgggg
gtccggaaagggaagcggagatga
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