Phenylobacterium parvum: HYN04_05160
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Entry
HYN04_05160 CDS
T05485
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
phb
Phenylobacterium parvum
Brite
KEGG Orthology (KO) [BR:
phb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phb03032
]
HYN04_05160 (topA)
03400 DNA repair and recombination proteins [BR:
phb03400
]
HYN04_05160 (topA)
Enzymes [BR:
phb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HYN04_05160 (topA)
DNA replication proteins [BR:
phb03032
]
Prokaryotic type
DNA Topoisomerases
HYN04_05160 (topA)
DNA repair and recombination proteins [BR:
phb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HYN04_05160 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AWM77203
UniProt:
A0A2Z3HL05
LinkDB
All DBs
Position
complement(1070496..1073129)
Genome browser
AA seq
877 aa
AA seq
DB search
MNLVIVESPAKAKTINKYLGSDYKVLASYGHVRDLPPRDGSVRPDEDFAMSWEVDAKASK
RLSEIAEAAKASDRIILATDPDREGEAISWHVLDVLRSKRAVKDKPVERVVFNAITRSAV
TEAMKSPRQIDMELVEAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVVDR
EIEIERFITREYWTVEADMTSAGAPFIARMSVHEGRKLTKFDLPDADAAEAARRAVETGA
FTISAVEKKPAKRSPAPPFTTSTLQQEAARKLGFSAQRTMQAAQKLYEGVDIGGETVGLI
TYMRTDGVQSAPEALQEARQVISGLFGADYVPESARQYRTKARNAQEAHEAIRPTSLARN
PGSLRLEGDLGRLYELIWKRMLASQMESARIERTTVDLSTPDGRTGLRATGQVVLFEGYL
KVYEEGRDDPEDEEGGRLPALSQGAAAEVRKAKADQHFTEPPPRYSEASLVRKMEELGIG
RPSTYASILSVLRDRSYVRMEKNRFIPEDKGRLVTVFLESYFNRYVEYDFTAALEEKLDQ
VSAGDLDWKALLREFWVEFQPATAEVLKQPTRDVIEVLNTTLGPFLFPGEGGRTCPKCGT
GELSLKPSRFEPFIGCSNYPECRYTRKFGPPSEDGDAPSGDRELGTDPETGLTVFLKSGR
FGPFVQLGEGEKPKRASLPKGWSPEAMDLEKGLRLLRLPREIGLHPEDGAVILAGIGRYG
PFVQHAGVYANLPGVDEVFEVGVNRAVALLAEKKAGGRGGRGAAAALRELGAHPADGAPV
RILSGRFGPYVKHGDVNANIPRGDDPQTLTLEDAVALIAARAAKSPAKTKPAARAKPAAK
PKVAAKAKAAPKAKAAPKAKATAAARARPPRKSSPES
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atgaacctcgtcatcgtcgagagccccgccaaggccaagaccatcaacaagtacctgggg
tcggactacaaggtcctggcgagctacggccacgtccgcgacctgcctccccgggatggc
tcggtgcgtccggacgaggatttcgccatgtcctgggaggtcgacgccaaggcctccaag
cggctctccgagatcgccgaggcggccaaggcctcggaccgcatcatcctggcgaccgac
cccgaccgcgagggcgaggccatttcctggcacgtcctcgatgtcctgaggtcaaagcgg
gccgtgaaggacaagccggtcgagcgggtggtcttcaacgccataacccggtcggcggtg
accgaggcgatgaagtcgccgcggcagatcgacatggagctggtcgaggcctacctggcc
cgccgggccctggactacctggtgggcttcaacctctctccagtgctctggcgcaagctg
ccgggcgcccgctcggccggacgggtccagtcggtcgccctccggctggtggtcgaccgc
gagatcgagatcgagcgcttcatcacccgcgagtactggaccgtcgaggccgacatgacc
tcggccggcgcgcccttcatcgcccgtatgtcggttcacgaaggccgcaagcttaccaag
ttcgacctgcccgacgccgatgcggccgaggccgcgcgccgggcggtggaaaccggcgcc
ttcaccatctcggctgtggagaagaaaccggcgaagcgctcgcccgccccgcccttcacc
acctcgaccctccagcaggaggccgcccgcaagctgggcttctcggcccagcgcaccatg
caggccgcgcagaagctctacgagggcgtcgacatcggcggagagactgtcggcctgatc
acctacatgcggaccgacggcgtccagtcggcgcccgaggccctccaggaggcccggcag
gtcatctccggccttttcggcgccgactacgtgcccgagtccgcccgccagtaccgcacc
aaggcgcgcaacgcccaggaggcccacgaagccatccgccccaccagcctggcccggaac
cccggatccctgcgtcttgagggcgatcttggccggctctacgagctgatctggaagcgg
atgctggcctcgcagatggagtcggctcggatcgagcgcaccaccgtggacctgtcgacc
cccgatggccggactggcctgagggcgaccggccaggtcgtcctcttcgaaggctacctg
aaggtctacgaggaaggccgggacgatcccgaggacgaggaaggcggccggcttccggcc
ctcagccagggcgccgccgccgaggtgcgcaaggccaaggctgaccagcacttcaccgaa
ccgccgccgcgctattccgaggccagcctggtccgcaagatggaagagctcggcatcggc
cggccgtcgacctacgcctcgatcctgtccgtcctccgcgaccgcagctatgtccggatg
gagaagaaccgcttcatccccgaggacaagggccgcctggtcacggtgttcctggagtcc
tacttcaaccggtacgtcgaatacgacttcaccgcggccctcgaggaaaagctcgaccag
gtctcggctggcgacctcgactggaaggccctgctccgcgaattctgggtcgagttccag
ccggccacggccgaagtcctgaagcagccgacgcgggacgtcatcgaggtcctgaacacg
acgctgggccccttcctcttccctggcgagggcggcaggacctgccccaagtgcgggact
ggcgagctttcgctgaagcccagccggttcgagccgttcatcggctgctccaactatccg
gagtgccgctacacccggaagttcgggccgccgtcggaggacggggacgccccctcgggc
gaccgcgaactggggactgatcccgagaccggcctcacggtcttcctcaagtccgggcgt
ttcggtccctttgtccagctgggtgaaggcgagaagcccaagcgcgcctccctgccaaag
ggctggtcgcccgaagccatggaccttgagaagggcctgcggctcctgcgcctgccgcgg
gagatcgggctgcatcccgaggacggcgcggtcatcctggctgggatcgggcgctacggc
ccctttgtccagcacgcgggggtctacgccaacctgccgggtgtagatgaggtcttcgag
gtcggggtgaaccgcgccgtggccctcctggccgagaagaaggctggcgggcgcggcggc
cggggggctgcggcggctcttcgggaactgggcgcccacccggccgatggtgcgccggtg
cgcatactgtcaggacgtttcgggccgtacgtgaagcacggggacgtcaacgccaacatc
cccaggggcgatgatccgcagaccctgaccctcgaggacgcagtcgccctgatagccgcc
cgcgccgccaagtcgccggccaagaccaagccggcggcccgggccaaacctgcggccaag
ccgaaggtggcggccaaggcgaaggcggctccgaaggccaaggcggcgccaaaagccaag
gccaccgcagcggcccgcgcccggcccccgcggaagtcctcaccggaatcctga
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