Phenylobacterium parvum: HYN04_06135
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Entry
HYN04_06135 CDS
T05485
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
phb
Phenylobacterium parvum
Brite
KEGG Orthology (KO) [BR:
phb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
phb03016
]
HYN04_06135 (rnd)
Enzymes [BR:
phb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
HYN04_06135 (rnd)
Transfer RNA biogenesis [BR:
phb03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HYN04_06135 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
DUF5955
Motif
Other DBs
NCBI-ProteinID:
AWM77380
UniProt:
A0A2Z3HVX7
LinkDB
All DBs
Position
1257151..1258329
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AA seq
392 aa
AA seq
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MTPITTTAELETFCAKVRGQPFVAVDTEFMRETTYWPKLCLIQAATPDAEAVIDPLAEGI
DLEPFLEVLRDASIVKVFHAARQDVEIFNNLKALPASLFDTQVAAMAAGYGEQIAYDALV
RNMLKIELDKSSRFTDWARRPLTDNQLTYALADVTHLAALYPRLRARLETEGRLAWVSDE
MTSLCDPALYDVAPANAWRRLKPRKQTARYLSVYRAVAEWRERTAQLRDQPRGRILKDDA
IDELASQAPTDPGQMERLRSVPKGFAGSRFGPELLETIREALRDPEATAPVIEKSRAPHN
PAAGAVVELLKVLLKARAEDRGVASKLIATVSDLEQIAQDDNAETPALSGWRLEAFGADA
LRLKRGELALVLDGTRVRVVEVRRAPRPAAAD
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgacccccatcacgaccaccgccgagcttgagactttctgcgcgaaagtccggggtcag
ccctttgtcgccgtggacaccgagttcatgcgcgaaaccacctactggcccaagctctgc
ctgatccaggcggccacgccggacgccgaggcggtgatcgaccccctggcggaggggatc
gacctggagcccttcctcgaggtcctgcgagacgcttccatcgtgaaggtcttccacgcc
gcacggcaggatgttgaaatcttcaacaatctcaaggcgctgccagcatcacttttcgac
acgcaggtagccgccatggcggcgggttacggcgagcagatcgcctacgacgccctggtc
cgcaacatgctgaagatcgagctggacaagtcgagccgcttcaccgactgggcgcgccgc
cccctgaccgacaaccagctcacctacgccctggccgacgtcacccacctggcggccctc
tatccgcgacttcgcgcccgtctcgagacggaggggcggctggcctgggtctcggacgag
atgacctctctctgcgatcctgccctctacgacgttgcccccgccaacgcctggcggcgc
ctcaagccccgcaagcagaccgcccgctatctcagcgtctaccgcgccgtggccgagtgg
cgcgagcgcaccgcccagctccgcgaccagcctcggggccgcatcctcaaggatgacgcc
atcgacgaactggccagccaggcgccgaccgatcccggccagatggagcggctgcggtcc
gtgcccaagggttttgcggggtcgcgcttcggtccggaacttctggagaccatccgcgag
gccctgcgcgatcctgaggccaccgccccggtgatcgaaaagtcccgcgcgccgcacaat
cccgcggcaggcgccgtggtggaactgctcaaggtcctgctcaaggcccgggccgaggac
cggggcgtggcctccaagctcatcgccacggtgtccgacctcgagcagatcgcccaggac
gacaatgccgagacgcccgccctcagcggatggcggctggaggccttcggcgccgacgcc
ctcaggctcaagcggggcgaactggccctggtgctcgatggaacccgggtccgggtggtc
gaggtgcgccgggcgccgcgtccggccgctgcagactga
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