Phenylobacterium parvum: HYN04_09635
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Entry
HYN04_09635 CDS
T05485
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
phb
Phenylobacterium parvum
Pathway
phb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYN04_09635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phb03019
]
HYN04_09635
Enzymes [BR:
phb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HYN04_09635
Messenger RNA biogenesis [BR:
phb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HYN04_09635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
HEM4
Utp25_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AWM77996
UniProt:
A0A2Z3HV20
LinkDB
All DBs
Position
2024969..2026423
Genome browser
AA seq
484 aa
AA seq
DB search
MTQFSDLGLDRGLLKALSDEGYSTPTPIQAQAIPPVLEGRDILGIAQTGTGKTAAFALPI
LHRLAADRRPAPRRGCRVLVLSPTRELATQIGESFKAYGRHLGVSVTVIFGGVKYGGQMR
AMAPGVDVLVATPGRLIDHLGEKTVTLQGVETFVLDEADQMLDMGFIVPIRRIVKYLPKA
RQNLFFSATMPTEIGQLAGELLNPNPVKVSVTPQATTVEKVRQKVIFVEQDRKRALLAEL
FEAKDFRRVIVFTRTKRGADRVARALEQSGVEAAAIHGDKSQGQRERALAAFKAGEVRAL
VATDIAARGIDIDAVSHVVQYELPNVPESYVHRIGRTARAGADGTAVAFCADDERNLLKD
IQKVTRQTIPNEDRRRDAGLSVMSAHLPDGAKEPSAPKGRQGQGGHRKGGSPRNGGGARA
ADGSSRPEGRSDLPGGLRKQRNRPSSAKPAGGKPGDFASTRPIDQSAFRGPKRESAGAKW
SPVD
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
ttgacccagttttccgacctcggcctcgatcgcggcctcctcaaggccctttccgacgag
ggctattccacgccgacgcccatccaggcccaggccattccccccgtcctcgagggccgc
gacatcctgggcatcgcccagaccggcaccggcaagaccgccgccttcgccctgcccatc
cttcaccgcctagccgccgaccgccgaccggccccccggcgcggctgccgcgtcctggtc
ctgtcccccacccgcgaactggccacccagatcggcgagagcttcaaggcctatggccgg
catctcggcgtctccgtgaccgtgatcttcggcggcgtgaagtatggcggccagatgcgc
gccatggcgcccggcgtcgacgtcctggtggccactcccggccgcctgatcgaccacctg
ggcgagaagaccgtgaccctgcagggggtcgagaccttcgtcctggacgaggccgaccag
atgctggacatgggcttcatcgtcccgatccgcaggatcgtgaaatacctgcccaaggcc
cgccagaacctcttcttctcggcgaccatgcccaccgagatcggccagctggccggcgaa
ctcctgaaccccaaccccgtcaaggtctcggtcaccccccaggccacgacagtcgagaag
gtccggcaaaaggtcatcttcgtagagcaggaccgcaagcgcgccctgctggccgagttg
ttcgaggccaaggacttccgccgggtgatcgtcttcacccggaccaagcgcggcgccgac
cgcgtggcccgcgccctggagcaatccggggtcgaggcggcggccatccacggcgacaag
agccagggccagcgcgagcgcgccctggcggccttcaaggccggcgaggtccgcgccctg
gtggccaccgacatcgccgcccgggggatcgacatcgacgcggtcagccatgtcgtccag
tacgagctgcccaatgtgccggagtcctacgtccaccggatcggccggacggcccgggcc
ggggcggacggcaccgccgtggccttctgcgccgatgacgagcgcaacctcctcaaggac
atccagaaggtcactcgccagacgatcccgaacgaggatcgccggcgggatgcgggcctg
tcggtgatgagcgcccacctgcccgacggcgccaaggaaccctcggcgcccaagggccgg
cagggccagggcggccaccgcaagggcggctcgccccgcaatggcggcggcgcccgggcg
gcggacggctcgtcccgtcccgaaggtcgctccgacctgcccggcggcctgcgcaagcag
aggaaccgcccgtcgtcggccaagcccgcgggcggcaagcccggggacttcgcctccacc
cgccccatcgaccagtccgcgttccgcggtccgaagcgcgagagcgccggggcgaagtgg
agcccggtggactag
DBGET
integrated database retrieval system
