KEGG   Phenylobacterium parvum: HYN04_11875
Entry
HYN04_11875       CDS       T05485                                 
Symbol
lpdA
Name
(GenBank) dihydrolipoyl dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
phb  Phenylobacterium parvum
Pathway
phb00010  Glycolysis / Gluconeogenesis
phb00020  Citrate cycle (TCA cycle)
phb00260  Glycine, serine and threonine metabolism
phb00280  Valine, leucine and isoleucine degradation
phb00310  Lysine degradation
phb00380  Tryptophan metabolism
phb00620  Pyruvate metabolism
phb00630  Glyoxylate and dicarboxylate metabolism
phb00640  Propanoate metabolism
phb00670  One carbon pool by folate
phb00785  Lipoic acid metabolism
phb01100  Metabolic pathways
phb01110  Biosynthesis of secondary metabolites
phb01120  Microbial metabolism in diverse environments
phb01200  Carbon metabolism
phb01210  2-Oxocarboxylic acid metabolism
phb01240  Biosynthesis of cofactors
Module
phb_M00009  Citrate cycle (TCA cycle, Krebs cycle)
phb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
phb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
phb_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:phb00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    HYN04_11875 (lpdA)
   00020 Citrate cycle (TCA cycle)
    HYN04_11875 (lpdA)
   00620 Pyruvate metabolism
    HYN04_11875 (lpdA)
   00630 Glyoxylate and dicarboxylate metabolism
    HYN04_11875 (lpdA)
   00640 Propanoate metabolism
    HYN04_11875 (lpdA)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    HYN04_11875 (lpdA)
   00280 Valine, leucine and isoleucine degradation
    HYN04_11875 (lpdA)
   00310 Lysine degradation
    HYN04_11875 (lpdA)
   00380 Tryptophan metabolism
    HYN04_11875 (lpdA)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    HYN04_11875 (lpdA)
   00670 One carbon pool by folate
    HYN04_11875 (lpdA)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:phb04147]
    HYN04_11875 (lpdA)
Enzymes [BR:phb01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     HYN04_11875 (lpdA)
Exosome [BR:phb04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   HYN04_11875 (lpdA)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox FAD_oxidored NAD_binding_8 GIDA AlaDh_PNT_C HI0933_like FAD_binding_2 Thi4 DAO Lys_Orn_oxgnase Pyr_redox_3 FAD_binding_3 DUF7768 3HCDH_N Lycopene_cycl
Other DBs
NCBI-ProteinID: AWM78384
UniProt: A0A2Z3I4D4
LinkDB
Position
complement(2540851..2542248)
AA seq 465 aa
MSQFDVVIIGGGPGGYNAAIRAGQLGLKAAIVEMRDTLGGTCLNVGCMPSKALLHASELY
EAANREFEHLGIEVAPRLNLKQMMAQKDESVTALTKGVDFLMKKNKVERFLGKGRLAGPG
RVEVEGGDGKVVTLEAANIVLATGSEPSGLPGVKVDGDRIVDSTGALSLGEVPKTLVVIG
AGIIGLELGSVWRRLGAEVTVIEYLDRICPGMDAELAKAFQRTLAKQGVNFRLGAKVTGA
KAGKSKVDLAVEPAAGGAAETLSADRVLLAIGRRPYTAGLGLETVGLVPDARGFLETDHF
RTAAAGVWAVGDVIHGPMLAHKAEEDAVACIELIAGKAGHVDYNLVPSVVYTTPEVAWVG
RNEEQLKAEGRAYKAGKFPFAANSRAKINHETDGLVKVLADAATDEILGVHILGPQAGEL
IGEYCVAMAFRAASEDIARVCHPHPTRSEAGRQAAMGVEGWTMQA
NT seq 1398 nt   +upstreamnt  +downstreamnt
atgtcccagttcgacgtcgtcatcatcgggggcggccccgggggctacaacgccgccatc
cgcgccggccagcttggcctgaaggccgccatcgtcgagatgcgcgacaccctgggcggc
acctgcctcaacgttggctgcatgccctccaaggccctcctgcacgcctccgagctctac
gaggcggcgaaccgggagttcgagcacctgggcatcgaggtcgccccgcgcctcaacctc
aagcagatgatggcccagaaggacgagtcggtgaccgccctgaccaagggcgtcgacttc
ctgatgaagaagaacaaggtcgagcgcttcctcggcaagggtcgcctggccggccctggc
cgggtcgaggtggagggcggggacggcaaggtcgtcaccctcgaggccgccaacatcgtc
ctcgccacaggctccgagccctcgggcctgccgggagtgaaggtggacggcgatcgcatc
gtcgattccaccggagccctgtccctgggcgaggtccccaagacccttgtcgtcatcggc
gccggcatcatcggcctggagctggggtcggtctggcgccggcttggggccgaggtcacg
gtcatcgagtacctggaccggatttgccccggcatggacgccgaactggccaaggccttc
cagcggaccctggccaagcagggcgtgaacttccgcctgggcgccaaggtgaccggcgcc
aaggccggcaagtccaaggtcgatctcgccgtcgagcccgccgccggcggcgccgccgag
accctttccgccgaccgggtcctcctggccatcggccggcgcccctacaccgccggcctc
ggccttgagacggtgggcctggttcccgacgcccggggcttcctggagaccgaccacttc
cgcacggccgcagctggggtctgggccgtcggcgacgtgatccacggccccatgctcgcc
cacaaggccgaggaggacgccgtcgcctgcatcgagctgatcgccggcaaggcgggccac
gtggactacaacctggtgcccagcgtggtctacaccacccccgaggtcgcctgggtcggc
cgcaatgaagagcagctgaaggccgagggccgcgcctacaaggccggcaagttccccttc
gccgccaatagccgggccaagatcaaccacgagaccgatggcctcgtgaaggtgctggcc
gacgccgccaccgacgagattctcggcgtgcacatcctggggccccaggcaggcgaactg
atcggcgaatactgcgtggccatggccttccgcgccgccagcgaggacatcgcccgcgtc
tgccacccgcacccgacgcgctccgaggccggccggcaggccgccatgggcgtcgagggc
tggaccatgcaggcctga

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