Phenylobacterium parvum: HYN04_12615
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Entry
HYN04_12615 CDS
T05485
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
phb
Phenylobacterium parvum
Pathway
phb03030
DNA replication
phb03410
Base excision repair
phb03420
Nucleotide excision repair
phb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HYN04_12615
03410 Base excision repair
HYN04_12615
03420 Nucleotide excision repair
HYN04_12615
03440 Homologous recombination
HYN04_12615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phb03032
]
HYN04_12615
03400 DNA repair and recombination proteins [BR:
phb03400
]
HYN04_12615
Enzymes [BR:
phb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HYN04_12615
DNA replication proteins [BR:
phb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HYN04_12615
DNA repair and recombination proteins [BR:
phb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
HYN04_12615
NER (nucleotide excision repair)
GGR (global genome repair) factors
HYN04_12615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
NYN_YacP
Taq-exonuc
Motif
Other DBs
NCBI-ProteinID:
AWM78519
UniProt:
A0A2Z3I0R3
LinkDB
All DBs
Position
complement(2691407..2694196)
Genome browser
AA seq
929 aa
AA seq
DB search
MACMSDAPLRLYLVDGSGFIFRAFHALPPLTRKSDGLPIGAVSGFCNMLWKLLVDMKAQP
DSPTHLAVVFDHSEKTFRNKIYPEYKAHRPPAPEDLVPQFPLVREATRAFGVHALEQPGF
EADDLIAAYARQVREAGGQVTIISSDKDLMQLVGDRVTMLDTMKNVRIGPDQVVEKFGVL
PDKVVEVQALCGDPVDNVPGAPGIGVKTAALLINEYGDLETLLARAGEIRQDKRRQILLE
FADQIRLSRQLVQLDDQAPLPSALEELAVADPDPDALAAFLQEMELNTLGRRVAGAHLAA
KAQAPADQTAAAEPVDVAAYACVRDLPTLDVWIARAQAAGVIAFDTETDALGSATAGLVG
VSLAVGPGEACYIPLAHEPEPGLALDAPGDLTQIPLATAIDRLRPLLEDPSILKVAQNAK
YDLGVLSRYGVQVSPVEDTMLISYVLEGGLHGHGMDELSRLHLGHSPIPFKQVAGTGKAQ
KSFRHVALEPATAYAAEDADVTLRLYRVLRPRLRKEGLLTVYETLERPMPPVLAAMENAG
VRVDPERLRRLSNDFSVRMGELEAEAHRLAGHPFNLGSPKQVGEVLYGQMGLQSRRTTAT
GAQGTDASVLEELAAEGHALPRVLLDWRQLSKLKGTYTDALAAAIAPATGRVHTSYALAS
TTTGRLSSTDPNLQNIPVRTEEGRKIRQAFVAEPGNVLISADYSQIELRLLAHVGDIPQL
KDAFARGLDIHAMTASEVFGVPIEGMPAEIRRRAKAINFGIVYGISAFGLAAQLSIPREE
AGDYIRTYFERFPGIRAYMDQAKETARRQGYVTTLFGRRVHIPAVQARSQAERAFGDRAA
INAPLQGASADIIRRAMIRMPGELAAAGLKTRMLLQVHDELIFEAPEAEAATASEVIRRV
MAAAPLPAVALSVPLVVDVRAAANWDDAH
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggcgtgcatgagcgacgcccccctccgcctctacctcgttgacggctccggcttcatc
ttccgggccttccacgccctgccgcccctgacccgcaagtccgacggcctgccgatcggg
gcggtctccggcttctgcaacatgctgtggaagctgctggtggacatgaaggcccagccg
gactcgccgacccacctggcggtggtcttcgaccattccgagaagaccttccggaacaag
atctaccccgaatacaaggcgcaccggccgccggcccccgaggacctggtcccccagttc
cccctggtgcgcgaggcgacccgggccttcggcgtccacgccctggagcagccgggcttc
gaagctgacgacctgatcgccgcctatgcccgccaggtccgcgaggcgggcgggcaggtg
acgatcatctcctcggacaaggacctgatgcagctggtgggcgaccgggtcaccatgctc
gacaccatgaagaacgtccgcatcgggccggaccaggtggtcgagaagttcggcgtcctt
cccgacaaggtcgtggaggtccaggccctgtgcggcgatccggtggacaatgtccctggc
gcccccggcatcggggtgaagaccgccgccctgctgatcaacgagtacggcgacctggag
accctgctcgcccgggccggcgagatccgccaggacaagcgccggcagatcctgctggag
ttcgccgaccagatccgcctgtcccgccagctcgtccagctggacgaccaggcgcccctg
ccctcggccctcgaggaactggcggtggccgatcccgacccggacgccctcgccgccttc
ctccaggagatggagctcaacaccctgggccggcgtgtggccggggcgcacctggcggcc
aaggcccaggcgcccgccgaccagaccgccgccgccgagcctgtggacgtcgccgcctac
gcctgcgtccgggacctgccgaccctggacgtctggatcgcccgggcccaggcggccggg
gtgatcgccttcgacaccgagaccgacgccctgggctcggccacggcggggctggtgggg
gtctccctcgccgtcgggcccggcgaggcctgctacatcccgctggcgcatgagcccgag
ccgggcctggccctcgacgcccccggcgacctgacccagatccccctggcgacggccatc
gaccgcctccggcccctgctggaggacccctcgatcctcaaggtcgcgcagaacgccaag
tacgacctgggggtcctgtcccgctacggggttcaggtgtcgccggtcgaggacaccatg
ctgatcagctacgtcctggagggcggcctgcacgggcacggcatggacgagttgtcccgc
ctgcacctggggcacagccccatccccttcaagcaggtggccggaaccggcaaggcccag
aagagcttccgccacgtggccctggagccggcgaccgcctatgccgccgaggacgccgac
gtgaccctgcggctctaccgggtcctgcgtccgcgtcttcgcaaggagggcctgctgacc
gtctatgagacccttgagcgccccatgccgccggttctggcggccatggagaacgccggg
gtccgcgttgatcccgaacgcctgcgccggctgtccaacgacttctccgtgcgcatgggc
gagctggaggccgaggcccaccgcctggccggtcatcccttcaacctcggcagccccaag
caggtgggcgaggtcctgtacggccagatgggcctccagtcgcgccgcaccaccgccacg
ggcgcccagggcacggacgcctcggtgcttgaggagctggccgccgagggccacgccctg
ccgagggtgctgctcgactggcgccagctgtccaagctgaagggcacctacaccgacgcc
ctggcggcggccatcgcaccggcgaccgggcgggtgcatacctcctacgccctggcctcc
accaccacgggccggctctcttcaacggatcccaacctgcagaacatccctgtccggacc
gaggaggggcgcaagatccggcaggccttcgtcgccgagccgggcaatgtcctgatcagt
gcggactacagccagatcgagctgaggctgctggcccacgtgggcgacatcccccagctg
aaggacgccttcgccaggggcctggacatccacgccatgaccgcctcggaggtcttcggg
gttcccatcgagggcatgcccgccgagatccgccggcgggccaaggccatcaacttcggc
atcgtctacggcatctccgccttcggcctggccgcccagctctccatcccgagggaagag
gccggagactatatccgcacctatttcgagcgcttccccgggatccgggcctacatggac
caggccaaggagacggcgcggcggcagggttatgtgaccaccctcttcgggcgtcgcgtg
cacatccccgccgtccaggcccgcagccaggccgagcgcgcctttggcgaccgggcggcg
atcaacgcccccctccagggcgcctcggcggacatcatccgccgggccatgatccgcatg
ccgggcgaactcgccgcggccggcctcaagacccgcatgctgcttcaggtgcacgacgaa
cttatcttcgaggcgccggaagcggaggccgccacagcctcggaggtcatccgccgggtg
atggcggcggcgcccctgccggccgtggccctcagcgtgccgctggtggtcgacgtgcgc
gccgccgccaactgggacgacgcgcactga
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