Phenylobacterium parvum: HYN04_12875
Help
Entry
HYN04_12875 CDS
T05485
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
phb
Phenylobacterium parvum
Pathway
phb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYN04_12875 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phb03021
]
HYN04_12875 (rho)
03019 Messenger RNA biogenesis [BR:
phb03019
]
HYN04_12875 (rho)
Transcription machinery [BR:
phb03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HYN04_12875 (rho)
Messenger RNA biogenesis [BR:
phb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HYN04_12875 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
AAA
S1CSD-TOTE-2
AAA_25
OB_RNB
AAA_14
DnaB_C
Spore_III_AA
Mor
Motif
Other DBs
NCBI-ProteinID:
AWM78568
UniProt:
A0A2Z3I4F3
LinkDB
All DBs
Position
complement(2744154..2745563)
Genome browser
AA seq
469 aa
AA seq
DB search
MSDDNIPQDAADLVEAIEDASLDLAAGEDAAAEDDEPTQASQAIAAMGLTRMSLQELKDK
SPADLLSFAETLEIENANSMRKQDMMFAILKVLAEEGVEISGSGTMEVLPDGFGFLRSPE
ANYLPGPDDIYVSPSQIRKFGLRTGDTVDGGVRAPREGERYFALVKVDQINFEPPENVRH
KVLFDNLTPLYPQERLRMEIDDPTLKDRSGRVIDIVSPLGKGQRCLIVAPPRVGKTIMMQ
NIAKAIAANHPECYLIVLLVDERPEEVTDMQRTVKGEVIASTFDEPAQRHVQVAEMVIEK
AKRLVEHKRDVVILLDNITRLGRAYNTTVPSSGKVLTGGVDANALQRPKRFFGAARNVEE
GGSLTIISTALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIYPAIDILKSGTRKDE
LITPPGQLAKTHVLRRILSPMGAQDAIEFLLDKLRQSKNNDDFFQSMNT
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgacaatatcccccaggacgccgctgacctcgtcgaggccatcgaagacgca
agcctggacctggccgccggcgaggacgccgccgcagaggacgatgaacccacgcaggcc
tcccaggcgatcgccgccatgggcctgacccggatgtccctccaggaactcaaggacaaa
tcgcccgccgacctgctgagcttcgccgagaccctggagatcgagaacgcgaactccatg
cgcaagcaggacatgatgttcgccatcctcaaggtcctggccgaagagggggtggaaatt
tccggctccgggaccatggaggtcctgcctgacggctttggcttcctgcgctcgccggaa
gcgaactatctcccgggtccggacgacatctatgtcagcccttcccagatccggaagttc
ggcctgcgcaccggggatacggtggatggcggcgtccgcgcgccccgcgagggcgagcgc
tacttcgcactcgtgaaggttgaccagatcaatttcgagccgcccgagaacgtgcgtcac
aaggtcctgttcgacaacctgaccccgctctacccgcaggagcgcctgcggatggaaatc
gacgacccgacgctcaaggaccgttcgggccgggtgatcgacatcgtctctccccttggc
aagggccagcgttgcctcatcgtcgccccgccgcgggtgggcaagacgatcatgatgcag
aacatcgccaaggcgatcgcggcgaaccacccggagtgctacctgatcgtcctcctggtt
gacgagcgacccgaggaagtcaccgacatgcagcggaccgtgaagggtgaggtgatcgcc
tcgaccttcgacgagcctgcccagcggcacgtccaggtcgccgagatggtgatcgagaag
gccaagcgcctggtcgagcacaagcgcgacgtggtcatccttctggacaatatcacgcgc
ctgggccgcgcctacaacaccactgtcccctcgtcgggcaaggtgctgacgggcggcgtc
gacgcgaacgccctgcagcggcccaagcggttcttcggcgcggcgcggaacgtggaggag
ggcgggtccctgaccatcatctccaccgccctgatcgatacgggcagccggatggacgag
gtgatcttcgaagagttcaagggcaccgggaactcggaaatcgtcctggaccgcaaggtc
gcggacaagcggatctatcccgctatcgacatcctcaagtccggcacccgcaaggacgag
ctcatcacgccgccggggcagctggccaagacccacgtcctgcgtcgcatcctgtcgccc
atgggcgcccaggacgccatcgagttcctgctcgacaagctgcggcagtcgaagaacaac
gacgacttcttccagtcgatgaacacctga
DBGET
integrated database retrieval system
