Planococcus halocryophilus: BBI08_09305
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Entry
BBI08_09305 CDS
T04473
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
phc
Planococcus halocryophilus
Pathway
phc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBI08_09305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phc03021
]
BBI08_09305
03019 Messenger RNA biogenesis [BR:
phc03019
]
BBI08_09305
Transcription machinery [BR:
phc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BBI08_09305
Messenger RNA biogenesis [BR:
phc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BBI08_09305
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
OB_RNB
AAA_22
ATPase_2
AAA
AAA_25
NACHT
Motif
Other DBs
NCBI-ProteinID:
ANU14039
UniProt:
A0A1C7DR25
LinkDB
All DBs
Position
complement(2752027..2753310)
Genome browser
AA seq
427 aa
AA seq
DB search
MATITISALENMTLKELYNLAKEYKLTNYSKLTKKELIFAILKTRAEQEGFFFMEGVLEI
IQSEGFGFLRPINYSPSSQDIYISASQIRRFDLRNGDKVSGKVRPPKENERYFGLLQVEA
VNGEDPEVAKERVHFPGLTPLYPDRHIRLETTPAHLSTRIMDLVSPVGFGQRGLIVAPPK
AGKTMLLKEIANSITTNHPEAELIVLLIDERPEEVTDIERSVDADVVSSTFDEVPENHVK
VAELVLERAMRLVEHKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFF
GAARNIEEGGSLTILATALVETGSRMDEVIYEEFKGTGNMELHLDRSLAERRIFPALDMR
RSGTRKEELLIEPTQLEKLWAIRKTFSDSHDFGERFLKKLGQTDTNEEFFEQLATEMKTH
RSNKKMI
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgattacaatttccgcattggagaatatgacgttaaaagagctttataatttg
gcgaaagaatacaaactaacgaattacagtaagttaaccaaaaaggaacttatttttgcg
attttaaaaacacgcgcagagcaagaaggctttttctttatggaaggcgtactagaaatt
attcaatcagaaggctttggtttcttgcgaccaatcaactactcaccaagttcgcaggac
atttacatttctgcttcacaaatacgccgttttgacttgagaaatggcgataaagtttca
gggaaagtgcgtccgccaaaagaaaatgaacgatattttggtttgcttcaagtagaagcg
gtaaacggcgaagatccagaagtggcaaaagaacgcgtccatttcccaggacttactccg
ctttatccagatcgccacattcgtttagaaacgacaccggcacatttatctacccgcatc
atggatttagtttcacctgttggatttggtcagcgtggcttgattgtagcgccaccaaaa
gcagggaagaccatgttgttaaaagaaatcgccaattcaattacaaccaatcacccagaa
gccgaattaatcgttttactaattgatgaacgtccagaagaagtgacggatatcgagcgc
tctgtagacgctgatgttgtgtcgtcaacatttgatgaagtgcctgaaaatcatgtgaaa
gtggcagagcttgttcttgaacgtgcgatgcgccttgttgaacataaacgtgatgttgtt
attttaatggactcgattactcgtttagcacgagcatataatttggttattccgccaagt
ggtcgtacactatcaggaggaattgacccggctgcttttcatagacctaaacgctttttt
ggagcagcacgtaatattgaagaaggtggaagcttaacaattttagccacagctttagta
gaaaccgggtcacgtatggacgaagtcatttacgaggaatttaaaggaacaggcaatatg
gaattgcatcttgatcgttctttggcagagcgccgtatcttcccagcacttgatatgcgc
cgttctggtacacgtaaagaagagttgctcatcgaaccaacacagcttgaaaagctttgg
gcgattcgaaaaactttctctgattcgcatgatttcggagagcgtttcctaaaaaaatta
ggccaaacagataccaatgaagaatttttcgagcaattggctacggaaatgaaaacgcat
cgaagcaataagaagatgatctaa
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