Planococcus halocryophilus: BBI08_10810
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Entry
BBI08_10810 CDS
T04473
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
phc
Planococcus halocryophilus
Pathway
phc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBI08_10810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phc03019
]
BBI08_10810
03400 DNA repair and recombination proteins [BR:
phc03400
]
BBI08_10810
Enzymes [BR:
phc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBI08_10810
Messenger RNA biogenesis [BR:
phc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BBI08_10810
DNA repair and recombination proteins [BR:
phc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BBI08_10810
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
T4SS-DNA_transf
DUF5876
Motif
Other DBs
NCBI-ProteinID:
ANU14326
UniProt:
A0A1C7DS40
LinkDB
All DBs
Position
complement(3055884..3057659)
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AA seq
591 aa
AA seq
DB search
MLESAKKLLQSHFGYESFRVGQEQAITQVFEGHNSICVMPTGGGKSMCYQIPALVMEGTT
IVVSPLISLMKDQVDALLAAGIPAAYINSSLDFDEVRETLMDVQRGAIKLLYIAPERLDS
EMFLNELQGVHVPLIAVDEAHCISQWGHDFRPSYRLISRMTELFPNNPTVLALTATATPQ
VREDICRILNIEEQHTVMTGFERANLTFSVVRGQDRERFVKEYVAKNDKEAGIIYAATRK
TVDSVYEMLIKKGIKAAKYHAGMSDNERKSGQERFLNDEVTVMVATNAFGMGIDKSNIRF
VIHYQLPKNMESYYQEAGRAGRDGLPSECIVLYASQDVQTQRFLIDQAQDPSRIPGELMK
LQGMVDYCHTENCLQQFIIHYFGDTAAEPCGHCGNCLDDRESLDVTKDVQMVLSCVIRMG
QKFGKVMTAQVLTGSRNKKVLDFGFDKLSTYGILKHQNSKEVSNLIEFMISQELLAVEQG
SFPTIYVPDGGRDVLLGKRKVLRKGAVITKQIATNDPLFEELRVIRKKLAEEAGVPPFVI
FSDKTLQDMVARKPKSAAEFLEVNGVGANKLEKYGEAFLVAIHSFNAIKNE
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
ttgttggaaagcgcaaaaaaattactgcagtcccattttggctatgagtcatttcgggtc
ggccaggagcaagccattacgcaagtttttgaaggacataattcgatttgtgtcatgccg
acaggcggaggtaagtcaatgtgctaccaaattccagcgcttgttatggaagggaccaca
atagttgtgtcgcctttaatttcattaatgaaagaccaagtggatgcacttttagcagcg
ggtattccggctgcttatataaatagctctctcgattttgatgaagtccgagagacgcta
atggatgttcaacgcggagcgattaaattgctttacattgcccctgaacgattggattca
gaaatgttcctgaatgaattgcaaggagttcatgtcccgttgattgctgtcgatgaagct
cactgtatttcgcagtggggtcatgacttccgcccgagttatcgtttgatcagccggatg
acggaattgtttccaaataatccgacggtgttagcattgactgcgaccgctacgcctcaa
gttcgtgaggatatttgtcgaattttaaatatcgaagaacaacatactgtaatgacaggt
tttgaacgagcaaacttaaccttttcggttgtacgaggacaagaccgtgagcgatttgta
aaagaatatgtggcaaaaaacgataaagaagcaggtattatttacgctgctacgcgcaaa
accgtagactcggtttacgagatgctaataaaaaaaggcatcaaagcggccaagtatcat
gcaggaatgtcagacaatgaaagaaaaagcggccaagaacgttttctgaatgacgaagtg
acagtcatggttgcgacaaatgcctttggaatgggtatcgataaatcgaatattcggttc
gttattcattatcagttacccaaaaatatggaaagctactatcaagaagcaggacgtgca
ggacgagatggtttgccaagtgaatgtattgtgctgtatgcgtcacaagatgtccaaaca
caacgatttttaatcgatcaagcgcaagatcctagtcgaattcctggagaactaatgaaa
ttgcaggggatggtggactactgtcataccgaaaattgcttgcagcaatttatcatccat
tattttggagatacggcggcggaaccttgtggacattgtggaaattgcttagatgaccgt
gaaagtcttgatgtcacgaaagatgttcaaatggtgttgtcatgtgtgattcgcatggga
caaaagtttgggaaagtaatgacagctcaagtgctaacaggatcgcgcaataaaaaagta
ctggattttggttttgataaactctcgacttatggaattttaaaacaccaaaattcaaaa
gaagtttcaaatttaatcgaatttatgatttctcaagaattgttagctgtcgaacaaggg
tcttttccaacgatttacgttcccgatggtggaagagatgttttgttaggtaagcggaaa
gtactaagaaaaggtgcagtaataacaaaacagattgctacaaacgatcctttattcgaa
gaattgcgtgttatccgtaaaaaattggcggaggaagccggtgttcctccttttgtcatt
ttttctgataaaacattacaagatatggtcgcaagaaaaccgaaaagcgcagctgaattt
ttagaagtgaacggcgtaggtgccaataaactcgaaaaatacggagaagcattcctagtg
gcaatccattcttttaatgcgataaaaaatgaataa
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