Planococcus halocryophilus: BBI08_12770
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Entry
BBI08_12770 CDS
T04473
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
phc
Planococcus halocryophilus
Pathway
phc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BBI08_12770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phc03400
]
BBI08_12770
Enzymes [BR:
phc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBI08_12770
DNA repair and recombination proteins [BR:
phc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BBI08_12770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
MFD_D3
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ANU14685
UniProt:
A0A1C7DT93
LinkDB
All DBs
Position
60391..63924
Genome browser
AA seq
1177 aa
AA seq
DB search
MNHILQIFSEDTQTQRFVEDLKQGNDHQLISGLSGSARPIFYQTIWSELEEPLLIVTPNL
LHAQRVYDDLVRLMGEQQVHLYPAEELIAAEVSFSGPELRAHRIDTLDHMKSVGKGIYIT
PVAGMRKLLPTKEQWDYANLRIAEGEELDTNKWLLKLVAMGYSRTPMVTTPGEFALRGGI
LDIYPLNFEHPVRIELFDTEVDSLRLFSAEDQRSLEKVQSLCILPASELVLSPDQRIQLA
EKLEVQLASSLKKIKADDTKALLLQHIQHDIDLLKQGETPEQLAKYASLIETQSAFLGDY
FPGNGLVFFDELGRIQEMTDTLEREEGDWIVSLLEEGKFLHDIPLTYTFREMMSKLQQKV
TFLSLFVRTFPMVSIKKSLAFSCKPMQSFHGQMHLLKAEMERWTLGKSQIFIVAAGDERL
EKVRSVLADYDMEAAIATPSTEIQGGQIYLVDGELSTGFEMPLQRLTVITDSELFKQQPK
KKTRAQKLTNAERIKSYSEIKPGDYIVHIHHGIGRFVGIETLESGGVHKDYLHIVYKADD
KLFVPVDKIDLIQKYIASEEKEPKLHKMGGAEWKKTRTKVSAAVQDIADDLIKLYAEREA
LRGFAFSEEQDMQRQFEAEFPYEETVDQLRSINEVKRDMENERPMDRLICGDVGYGKTEV
AIRAGFKAVLDGKQVAFLVPTTILAQQHFETMSERFKDYPITVGLMSRFRSKKQQTETVK
GLKNGSVDIVVGTHRILSKDMQYKDLGLLIIDEEQRFGVTHKEKIKQMKTNVDVLTLTAT
PIPRTLHMSMIGVRDLSVIETPPANRFPVQSYVMEHNGALVREAIEREMARGGQVFYLYN
RVDDMTRKVEEIQQLVPEARVGYAHGQMSETELESVILSFLDGDYDVLVTTTIIETGIDI
PNVNTLIVYNADRMGLSQLYQLRGRVGRSSRVAYAYFMYQRDKVLTDVAEKRLMAIKEFT
ELGSGFKIAMRDLTIRGAGNLLGSQQHGFIDSVGFDLYSQMLQEAIDERQTGVKKEVIPE
IEISLDVDAYIPDAYISDGYQKIQMYKRVKGIETEEEMRELQDELIDRFGDMPTETDSLL
RIARMKVWAREVGVESLKQNGKLVSVRLSEKGTASINGGKVVEESAAYGRAVGFSMSGQQ
LVMTIDENKTKKQHPFDVLEGMMKLLPESLREEKAIL
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacattttacagattttttcagaggatactcagacacaacgatttgtagaagat
ttaaaacaaggaaatgatcatcaattgatttctggtttatctggcagcgcacgaccaatt
ttttatcaaaccatctggtcggaactagaagagcctttactaattgtgacacccaactta
ttgcatgcgcaacgtgtatatgatgatttggtccgactcatgggggaacaacaagttcat
ctttatccggcagaagaattaatcgcagcagaagtgtctttttcaggtcccgaattgcgt
gctcacagaatcgatacactcgatcatatgaagagtgttggtaaaggcatttacatcacg
ccagttgcagggatgcgcaagttattgccgacaaaagagcagtgggattacgccaattta
cgaattgcagaaggtgaagaactcgatacaaacaaatggctgttaaagttagtagcaatg
gggtactctcggacgccaatggtaactactcccggtgaatttgcgcttcgtggaggcatt
ttagatatttatccactgaattttgaacacccagtgcgcatcgaattattcgatacagaa
gtggattcattacgcctattttcagcggaagatcaacgttcgctcgaaaaagtccaatcg
ctttgtattttgccagccagtgaattggtgctatcacccgaccaacgaattcaattagca
gaaaaactagaagttcaacttgcttctagtttgaaaaaaataaaagctgacgatacgaaa
gccttattgctgcaacatattcagcatgatattgacttattgaaacaaggagaaactcca
gagcaattggcgaaatatgcttcattgattgagacgcaatcggcatttttgggtgattat
ttcccggggaatggactcgtcttttttgatgagcttggtcgtattcaagaaatgacggat
actttagagcgtgaggaaggcgattggatcgtgtcgcttcttgaagaaggaaagtttctt
cacgatatcccgttgacttatacgttccgtgaaatgatgtcgaagttgcaacaaaaagtg
acgtttttatctttattcgttcggacattcccgatggtatccatcaagaaatcattggct
ttttcatgcaagccgatgcaatcattccatgggcaaatgcatttgttaaaagcagaaatg
gagcgctggacattaggcaagtcgcaaatcttcatcgtggcagcgggagatgagcgccta
gagaaagtacgttccgtgctagcagattacgatatggaagctgctattgccactccttct
actgaaattcaaggcggtcaaatctatttagttgatggagaattatcaacaggctttgaa
atgccgttgcaacgtttaacggtcatcacagactccgaattgtttaagcagcagcccaaa
aagaaaacgcgtgcacaaaaactaacgaatgctgagcgcatcaagagctactcggagatt
aagccaggtgactatattgttcatattcaccacgggatcggccgctttgtaggcattgaa
acgctcgaaagtggaggcgttcataaagattatttgcatatcgtttataaagccgacgat
aaattattcgtaccagtcgacaaaattgatttgattcaaaaatacattgcctctgaagaa
aaagaaccaaaactgcataaaatgggcggagcagaatggaagaaaacgcgtacaaaagtg
tcagccgccgttcaagacattgcagatgacttgatcaaactatatgcagaacgcgaagca
ttgagagggtttgctttttccgaagagcaagacatgcaacgccaatttgaagccgagttt
ccgtatgaagaaacggtcgatcaattgcgttctatcaatgaagtgaaacgtgatatggaa
aatgagcgaccgatggatcgcctcatatgcggggacgtgggttatgggaaaacagaagta
gccattcgtgcaggatttaaagcagtactcgacggcaaacaagtggcgtttcttgtaccg
acaacgattttggcacagcaacactttgaaacgatgagtgaacgatttaaagattatccg
attacggtcgggttgatgagtcgcttccgttcaaaaaaacaacaaacagaaaccgttaaa
ggtttaaaaaatgggtcagtcgatattgtggtaggaacgcatcgtattttatcaaaagac
atgcaatataaagaccttggcttattgatcattgatgaagagcaacgttttggtgtgacg
cataaagaaaaaatcaaacaaatgaaaaccaatgtcgatgttttaacgcttaccgcaaca
ccaattccacggacgctacatatgtcgatgattggtgtacgcgatttgtcagtgatcgaa
acgccaccagccaaccgctttcctgtgcaaagttatgtgatggaacataacggggcactc
gttcgcgaagcaattgaacgcgaaatggcacgtgggggccaagtgttttatttgtataat
cgtgtagatgatatgacacggaaagtagaagaaattcaacaattggtaccggaagcgcga
gttggttatgcgcacggacaaatgagtgaaacggaactcgaatcggtcattttgagtttc
ctagatggcgattacgatgtcttggtgacaacgacgattatcgaaactggcattgatatt
ccaaacgttaatacattaatcgtctataatgctgatcgcatgggcttgtcccagctgtat
caattgcgtggacgtgtcgggcgttcaagtcgtgtcgcgtatgcgtactttatgtatcag
cgcgacaaagtgttaaccgatgttgcagagaagcgattgatggccattaaagaatttacg
gagcttggttcagggtttaaaatcgctatgcgcgatttaacaatacgcggagcagggaac
ttactcggttcacaacaacacggctttattgattcggtcggttttgatttgtattcgcaa
atgctgcaagaagcaattgacgaacgtcaaacaggtgttaaaaaagaagtcataccggaa
attgaaatttcacttgatgtggatgcctacattccagatgcttatattagtgatggttac
caaaaaattcaaatgtacaaacgcgtcaaaggcattgaaacagaagaagaaatgcgtgag
ttgcaagatgaattgatcgatcggttcggtgatatgccaacggaaacggatagcttattg
cgcattgcacgtatgaaagtatgggcgcgcgaagtcggggtagaatcgcttaagcaaaat
ggcaaacttgtttctgttcgcttaagtgaaaaaggtaccgccagcatcaatggtgggaaa
gtggtcgaagaatctgccgcttatggccgcgctgttggatttagtatgtcgggtcagcaa
ttggttatgaccattgatgagaataaaaccaaaaaacaacatccgtttgatgttctcgaa
ggcatgatgaaattattgccagaatcgctgcgtgaagaaaaagcgattttgtaa
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