Planococcus halocryophilus: BBI08_13080
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Entry
BBI08_13080 CDS
T04473
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
phc
Planococcus halocryophilus
Pathway
phc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BBI08_13080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phc03021
]
BBI08_13080
03400 DNA repair and recombination proteins [BR:
phc03400
]
BBI08_13080
Enzymes [BR:
phc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BBI08_13080
Transcription machinery [BR:
phc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BBI08_13080
DNA repair and recombination proteins [BR:
phc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BBI08_13080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ANU14728
UniProt:
A0A1C7DTS5
LinkDB
All DBs
Position
121874..125479
Genome browser
AA seq
1201 aa
AA seq
DB search
MIDVNNFEYMKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRSLEEVIYFASYVVIDPADTPLEKKQLLSEKEYRAYRDKFGKKFQAAMGAEAIKRLLQ
EIDLERETDSLKEELKTAQGQRRTRAIKRLEVVESFRNSGNNPDWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKG
MAIELFKPFVMKELVERGLAHNIKSAKRKIERLHSEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGKAIRLHPLVCTAYNADFDGDQMAVHVPLSSEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKGATGEGATFSGPEEVMIAYQTGHVHLHTRIAIQ
AGAVNNPTFTEEQNKMLLLTTVGKIIFNEILPKSFPYINEPTDFNLQVETPAKYFVPTTT
NIRKHIEESELVTPFKKKILGEIIAEVFKRFHITETSKMLDRMKSLGFKYSTQAGITVGV
SDIVVLPDKGEILISAQENVDKVMKQFRRGLITEEERYARVISYWSNAKDIIQGKLMASL
DNLNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDAIVRENDCGTDRGLLVGALMEGTEVIEELD
ERIVGRHAKKTIRHPETKGIIVAKDELITQDLTRLIVEAGIKEVTIRSAFTCNTKHGICK
KCYGTNLATGDEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
ESRNPKGQAVISEITGTVTEVEEIREGQKEVTIQGDVETRKYLAPYNARIKVQVDDAIVR
GEVLTDGSIDPKQLLQVKDVQAVQVYLLKEVQKVYRMQGVEIGDKHVEVMVRQMFRKVRV
IEAGDTELLPGSLLDIHQFTEANVKAVLEGNLPATSRPVILGITKASLETESFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMQRYRQIKIAQSEKAAQQEIVGTE
S
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
ttgatagatgttaataattttgagtacatgaaaatcggattagcgtcacccgataaaatt
cgctcatggtcttatggagaagtcaaaaagccagaaacaatcaattaccgtacattaaaa
cctgaaaaagatggtttgttctgcgaacgtattttcggtcctacaaaggattgggaatgt
cattgtggtaaatacaaacgtgttcgttataaaggtgttgtctgtgatcgttgtggcgtt
gaagttacacgttcgaaagttcgccgtgagcgtatgggacacattgaattagcagctcct
gtttcacacatttggtatttcaaaggaattccgagccgtatgggacttatcttagatatg
tctccacgttcacttgaagaagttatttactttgcttcttatgtggtaattgatcctgca
gatacaccacttgaaaagaaacagcttctatctgaaaaagaataccgcgcttaccgtgat
aagtttggtaagaaattccaagctgctatgggagcagaagcaatcaaacgtctattgcaa
gaaattgaccttgagcgcgaaacggattctttaaaagaagagttgaaaacagctcaaggc
caacgccgcactcgtgcgattaaacgccttgaagtcgttgagtcattccgtaactcagga
aacaatcctgattggatgattttagatgttctacctgttattccacctgaacttcgcccg
atggttcaattagatggcggtcgctttgcgacttctgatttaaatgacctatatcgtcgc
gtaatcaaccggaataaccgtttgaaacgtcttttggatcttggagcgccaagcattatc
gttcaaaacgaaaaacgtatgcttcaagaagctgttgatgctttaatcgataacggtcgt
cgtggtcgtccagttacaggaccaggtaaccgtccattgaaatctctttctcatatgtta
aaaggtaagcaaggacgtttccgtcaaaaccttcttggtaaacgagttgattactcaggc
cgttcagtaattgtagttggacctaacctgaaaatgtatcaatgtggtttgccgaaaggg
atggcaatcgaattgttcaaaccttttgttatgaaggaattggttgaacgtggattggct
cataacatcaagagtgcaaaacgcaaaatcgaacgtcttcattctgaagtttgggatgta
ttagaagatgtaatcaaggagcatccggttctattgaaccgagcaccaactcttcacaga
ttaggtatccaggcatttgagccgacactagttgaaggtaaagcgatccgtctacatcca
cttgtatgtactgcatataatgccgatttcgatggtgaccaaatggctgttcacgtacct
ttatcatctgaagcgcaagctgaagcaagattattgatgcttgcagctcaaaacattttg
aatccaaaagacggaaaacctgttgtaacaccatctcaggatatggttttaggaaactat
tacttaacacttgagcgtaaaggtgctacaggagaaggcgctactttctcaggacctgaa
gaagtcatgatcgcttatcaaacaggccatgtgcatttgcatacacgtattgcgattcaa
gctggagctgtaaacaacccgacattcacagaagaacaaaacaaaatgcttttattaaca
actgttggtaaaattattttcaatgaaattctgccgaagtcattcccgtatattaatgaa
ccgactgatttcaacttgcaggtggagacgccagcgaaatattttgttccaacaacgact
aatattcgtaagcatattgaagaatcggaacttgtaacaccgtttaaaaagaaaattctt
ggtgaaatcattgcagaagtgttcaagcgtttccatattacggaaacttcgaaaatgcta
gatcgcatgaagagccttggatttaaatattcaacacaagccggcattactgttggtgtg
tcagatatcgtagttcttccagacaagggagaaattttaatcagtgcacaagaaaatgtt
gataaagtaatgaaacaattccgtcgcggattgattacagaagaagaacggtatgcacgt
gtcatttcttattggagtaatgcaaaagatatcattcagggcaaactgatggcatctctt
gacaacttaaacccaatctttatgatgagtgattccggagctcgtggtaatgcttccaac
tttacacagcttgctggtatgcgcggattgatggccaacccggctgggcgtattatcgaa
cttccgattaaatcttctttccgtgaaggtttgacagtacttgaatacttcatctctact
cacggtgctcgtaaaggtcttgccgatacagcactgaaaacagccgattctggttactta
actcgtcgtttagtagacgttgcacaagatgcaattgtccgcgaaaatgattgtggaacg
gatagaggcttattggttggagcgttgatggaaggcacagaagtaattgaagagcttgat
gagcgtatcgttggtcgtcatgcgaagaaaacaattcgtcatccagaaacaaaaggaatt
attgtagcaaaagatgaattaatcacacaagatttaactcgtctgattgtagaggctggt
attaaagaagttacaatccgctctgcatttacatgcaatacaaaacacggtatttgtaag
aaatgttatggcacgaacttagcgactggagacgaagttgaagtgggcgaagcagtgggt
attattgcagctcaatcaatcggtgagccaggaactcagcttacaatgcgtacattccat
actggtggggttgcaggagacgatattactcaaggtcttccgcgtatccaagaaatattt
gaatcgcgtaatcctaaagggcaagcagttatttctgaaattacaggtacagttactgaa
gttgaagaaattcgcgagggccagaaggaagtaacgattcaaggtgatgttgaaacacgt
aaatatttagctccttacaatgcacgtatcaaagttcaagtagatgatgcgattgtgcga
ggcgaagtattgacagacggttcaattgatccgaaacaattgcttcaagtaaaagacgtt
caagctgttcaagtgtatctattgaaagaagttcaaaaagtataccgtatgcaaggcgta
gaaatcggcgataagcacgtagaagttatggttcgtcaaatgttccgtaaagttcgggta
attgaagccggagatacagaattgctaccaggttcactattggatattcaccaatttact
gaagctaatgttaaagcggttctagaaggtaacttaccagctacaagccgtcctgtaatt
ctaggtattacaaaagcttctcttgaaacagaatcattcttatcagccgcatctttccaa
gaaacgactcgcgtcttaacagatgcagcgattaaagggaaacgtgatgagcttctagga
ttgaaagagaacgttattatcggcaaacttgttccagctggaacaggaatgcagcgttac
cgtcaaattaaaattgctcaaagcgaaaaagcagcacagcaagaaattgtcggtacagaa
tcataa
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integrated database retrieval system
