KEGG   Planococcus halocryophilus: BBI08_13685
Entry
BBI08_13685       CDS       T04473                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K02405  RNA polymerase sigma factor FliA
Organism
phc  Planococcus halocryophilus
Pathway
phc02020  Two-component system
phc02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:phc00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    BBI08_13685
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    BBI08_13685
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:phc03021]
    BBI08_13685
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:phc02035]
    BBI08_13685
Transcription machinery [BR:phc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     BBI08_13685
Bacterial motility proteins [BR:phc02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    BBI08_13685
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r2 Sigma70_r4_2 Sigma70_r3 PhyR_sigma-like HTH_5 Rv2175c_wHTH Sigma70_ECF CT_C_D HTH_23
Other DBs
NCBI-ProteinID: ANU15542
UniProt: A0A1C7DVV3
LinkDB
Position
222425..223183
AA seq 252 aa
MLNHKLSKEELTYWSDWQQHRDPEAGEYLVEQYLPLVDYVIQRFMISLPKTVEKDDVRSY
AYEGLLDALSKFDIERDLKFETYASWRIKGAIIDGLRHSDWLPRSVRDKVKKIEKAYLLL
EQQNSVAVSDEEVSSYLGITKAELNKTVSEAALATMISMDDEHFEERGTVAVYNADSPER
QLSERMTKESLVRAIEKLPEKEKITVSLCYFEEMKLTEIAEILSVSVSRVSQLHSKAMLR
LHASILSVHDHY
NT seq 759 nt   +upstreamnt  +downstreamnt
atgctgaatcataaattatcaaaagaagagcttacttattggagcgactggcaacaacat
cgagatccagaggctggcgagtacttggttgaacagtaccttcctttggtcgattacgtg
attcaacggttcatgatcagtttgcccaaaactgtggaaaaagatgatgtccgcagttat
gcttacgaaggcttgctggacgctttaagtaagtttgatattgaaagggatttgaaattt
gaaacctatgcttcttggcgtatcaaaggagctattatcgatgggttacgacacagtgac
tggctgccgcggtcagtcagagataaagtcaagaaaattgaaaaagcctatcttttgtta
gaacagcaaaatagtgtagcagtctctgatgaagaggtcagttcgtatttaggcattacg
aaagcggagttgaataagactgtgtctgaagctgccttagcaacgatgatttcaatggat
gacgaacactttgaagagcgaggaacggtagcagtttataacgctgattcacctgaacgg
caactgtcggagcggatgacaaaagaatctttggttcgtgctattgagaagctgcccgaa
aaagaaaaaatcaccgtttctttatgttattttgaagagatgaaattaaccgaaattgca
gaaattctaagtgttagtgtatcgagagtttcgcaactccattcaaaagccatgctgcga
cttcatgcatcaattttgtctgtacacgatcattattga

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