Pedobacter heparinus: Phep_0125
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Entry
Phep_0125 CDS
T00978
Name
(GenBank) DNA repair protein RadA
KO
K04485
DNA repair protein RadA/Sms
Organism
phe
Pedobacter heparinus
Brite
KEGG Orthology (KO) [BR:
phe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phe03400
]
Phep_0125
DNA repair and recombination proteins [BR:
phe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Phep_0125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_25
ATPase
Zn_ribbon_LapB
DnaB_C
ChlI
DUF7125
AAA
Lon_C
AAA_16
AAA_24
AAA_22
nSTAND3
AAA_5
AAA_14
nSTAND_NTPase5
Rad51
CobU
KdpD
bpMoxR
ABC_tran
DUF7129
SLFN-g3_helicase
NTPase_1
NACHT
ATPase_2
PAXNEB
AAA_18
RNA_helicase
Elong_Iki1
DZR
GvpD_P-loop
zf-RING_10
Motif
Other DBs
NCBI-ProteinID:
ACU02351
UniProt:
C6XY84
LinkDB
All DBs
Position
complement(150070..151446)
Genome browser
AA seq
458 aa
AA seq
DB search
MAKTKSAYFCQSCGYESAKWLGKCPSCNEWNTFVEEVIEKAAAKVPAWKTSTGTQRVSKP
NKVDNIQSITEERILTGDTELDRVLGGGLVAGSVILIGGEPGIGKSTLMLQLALNISGKK
ILYVSGEESEQQIKMRAERITVQPMADCYILTETSTQNIFKQIEELEPDIVVVDSIQTLH
SAHIESTPGSVSQVRECTAELLRFAKETDTPVFLIGHITKDGTIAGPKILEHMVDTVLQF
EGDRHHVYRILRSIKNRFGAAAELGIYAMHSSGLRQVSNPSEILLSQRDEELSGIAISAT
LEGARPMLIETQALVSAAAYGTPQRSSNGFDTKRMNMLLAVLEKRCGFRLSTRDVFLNIA
GGIKVEDPAIDLAILVAIISSHEDIFISSKICFAAEVGLSGEIRAVNRIEQRISEAEKLG
FERIFISNYNRKGLVVERYKIELIAVSKIEDVFSQLFG
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
ttggctaaaacaaaatcagcatatttttgccagagctgcggatacgaatcagcaaaatgg
ctgggcaaatgtccgtcctgcaatgagtggaatacttttgtggaagaggttattgaaaaa
gcagctgctaaagtgcccgcctggaaaacaagtaccggtacccagcgcgttagtaagccc
aacaaggtagacaatatccagtctataaccgaagaacgcattttgaccggcgatacagag
cttgaccgggttttgggcgggggccttgttgctggttctgttattttgatcggcggtgag
cctggcattggcaaatccactttaatgctgcagctggccttaaacatttcgggcaaaaag
attttgtatgtatccggagaggaaagtgaacagcagattaaaatgcgggcagagcggatc
actgtacagcccatggcagattgctacatcctgacagaaacttccacacaaaatatattt
aaacagatagaagagcttgagcccgatattgtggttgtcgattcgatacagaccctgcat
tcggcacacatagaatctaccccgggcagcgtgtcgcaggtaagggagtgtacggccgag
ttgctgcgttttgcaaaggagacggataccccggtatttctaataggccacattaccaag
gacggaacgattgctgggcccaaaatactggaacatatggtggataccgttttacaattt
gagggcgacaggcaccatgtataccggatattgcggtcgataaaaaacaggtttggtgct
gcagccgagcttgggatctatgccatgcacagcagcggattgaggcaggtttccaaccca
tcagaaatactgctttcccagcgggatgaagagctgagcggaattgccatatcggccact
ttagagggcgccagaccaatgttgattgaaacacaggccctggtgagtgcggcagcctat
ggaaccccccagcggtcctcaaatggcttcgataccaaaaggatgaacatgctgcttgcc
gtgctggaaaaaagatgcgggttcagattgagcacaagagacgtatttttaaatattgcc
ggcggaataaaggtagaggacccggctattgacctggccatcctggtggccattatctct
tctcatgaggatatatttatttcttcaaaaatatgctttgctgctgaagttggcctttct
ggcgagatcagggcggtaaaccgaattgaacaacgcatttctgaagcagaaaagcttggt
tttgaacggatctttatttctaattacaacaggaaagggctggtagttgaacgttataag
attgagttgattgcagtgagcaaaatagaagatgttttctcccagttatttggataa
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