Pedobacter heparinus: Phep_0140
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Entry
Phep_0140 CDS
T00978
Name
(GenBank) transcription termination factor NusA
KO
K02600
transcription termination/antitermination protein NusA
Organism
phe
Pedobacter heparinus
Brite
KEGG Orthology (KO) [BR:
phe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phe03021
]
Phep_0140
03009 Ribosome biogenesis [BR:
phe03009
]
Phep_0140
Transcription machinery [BR:
phe03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
Phep_0140
Ribosome biogenesis [BR:
phe03009
]
Prokaryotic type
rRNA transcription factors
Phep_0140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NusA_N
KH_5
S1
KH_NusA_C
KH_2
KH_1
Ssb-like_OB
Motif
Other DBs
NCBI-ProteinID:
ACU02366
UniProt:
C6XY99
LinkDB
All DBs
Position
164881..166116
Genome browser
AA seq
411 aa
AA seq
DB search
MSNINLIDSFQEFKDFKNIDRPTVISVLEEVFRSMLRKKYGTDENCDVIVNPDNGDLEIW
RTRKVMEDGFSEDDDLEIELAEVKQLDPDMEVGDDYIEQITLESFGRRAILAARQTLVSK
VLELEKDEIFKKYKDRVGEIVTGEVYQVWKKETLVLDDEGNELMMPKTEQIPADYFKKGD
TVRAVILKVDMVNATPKIIISRIAPEFLQRLFEIEVPEIFDGLITIKKIVREPGERAKVA
VESYDDRIDPVGACVGMKGSRIHGIVRELKNENIDVINFTNNISLYITRALSPAKITSIK
LDDETKHASVYLKPDQVSLAIGRGGHNIKLAGKLTGYEIDVYREAGEEDEDVDIEEFSDE
IDSWIIDELKAIGCDTAKSVLALSVDELVKRTDLEEETIKEVMSILKSEFE
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatattaatttaatcgattcatttcaagagtttaaagacttcaagaacatcgac
cgtcctacagtgatcagtgtgctggaagaggtatttcgcagtatgctgcgcaaaaaatat
ggtactgatgagaattgtgacgtaattgttaacccggataacggtgatttggaaatctgg
cgtaccagaaaagtgatggaggatggtttttctgaggatgacgatctggaaattgaactt
gcagaggtaaaacaactggatccggatatggaagttggcgacgattacattgagcagatc
actttggaaagctttggccgcagggcgattttagctgcccgtcagaccctggtttctaaa
gttctggaactggagaaagacgagatctttaaaaaatataaagacagggttggtgagatt
gtgaccggtgaggtttaccaggtatggaaaaaagaaaccctggtgctggatgatgaaggc
aacgagctgatgatgcctaaaacagagcagataccggccgattatttcaaaaaaggggat
actgtacgtgcagtgatcctgaaggtggatatggtaaatgctacacctaagattatcatt
tcgaggattgcacctgaatttttacagcgcctgtttgaaattgaggttcctgagatcttt
gatggtctgatcaccattaaaaagattgttcgtgagccaggcgaaagagctaaggttgcg
gtagaatcttacgatgacaggattgacccggtgggtgcctgtgtaggtatgaaaggttcg
cgtatccatgggatcgtaagagagctgaaaaacgagaatattgacgtaattaactttacc
aataacatttcactatacatcacaagggctttgagcccggccaagatcacttctattaaa
ttagatgatgaaaccaaacatgcttcggtttacctgaagcctgaccaggtttcactggcc
ataggccgtggtgggcataacattaaactggccggtaaattgaccggttatgaaattgat
gtataccgtgaagcaggtgaagaagacgaagatgtggacatcgaagaattctcggatgag
atcgatagctggatcattgatgagctgaaagcgataggctgtgatacggcaaaaagtgtg
ctggcactttctgtagacgaattggttaaacgtaccgatttagaggaagaaaccatcaaa
gaagtgatgagtattttaaaatcagaatttgaataa
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