Pedobacter heparinus: Phep_0249
Help
Entry
Phep_0249 CDS
T00978
Name
(GenBank) RNA modification enzyme, MiaB family
KO
K06168
tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:
2.8.4.3
]
Organism
phe
Pedobacter heparinus
Brite
KEGG Orthology (KO) [BR:
phe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
phe03016
]
Phep_0249
Enzymes [BR:
phe01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.3 tRNA-2-methylthio-N6-dimethylallyladenosine synthase
Phep_0249
Transfer RNA biogenesis [BR:
phe03016
]
Prokaryotic type
tRNA modification factors
Methylthiotransferases
Phep_0249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TRAM_2
Motif
Other DBs
NCBI-ProteinID:
ACU02475
UniProt:
C6XYZ3
LinkDB
All DBs
Position
complement(292157..293614)
Genome browser
AA seq
485 aa
AA seq
DB search
MIDLQLTDKKHDEARQGEALVTAAPLVRNGRKLYIESYGCQMNFADSEIVASILLDQGFE
TTGDYKEADVVFINTCSIRENAEQRVRNRLSQFGAEKRRNPKLIVGVLGCMAERLKSKFL
EEEKLVDVVVGPDAYRELPQLLNEVESGHKAINVLLSREETYADISPVRLNGNGITAFIS
IMRGCDNMCSFCVVPFTRGRERSRDPHSILAEAQDLFDRGYKEVTLLGQNVDSYKWKGAA
TDENREAQEIEVNFAQLLEKVALISPELRVRFSTSHPKDITDEVLYTIAKYENICNYIHL
PVQSGSTRVLELMNRTYTREWYINRIDAIRQIIPDCAISSDIIAGFCTETEEEHQETLSI
MDYVGYDFAFTFSYSERPGTLAARKLEDDVPEEVKKRRLAEILAKQQETSLFRLQQFVGK
TVKILVEGTSKKSDRDFCGRNDQNAMVVFPATAGIKAGQYVNVHIDRCTSATLLGTVVVQ
EEAAV
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgattgatttacagctgacagataagaaacacgatgaagcacgacaaggagaggctttg
gttacagcggcacctttagtgcgcaatggcaggaagctgtatattgaaagttacggttgc
cagatgaattttgcggacagtgaaattgttgcatcgattttattagaccagggatttgaa
actacgggcgactataaagaagcggatgtggtgttcattaatacctgttcaatccgggaa
aacgcagaacaaagggtacgcaacaggctgtcgcagtttggcgcagagaagcgcagaaac
ccaaagcttattgttggggtactgggctgtatggccgaacgcctgaaatctaaatttctg
gaagaagaaaaactggtggatgtggtggttggccctgatgcttaccgcgaacttccgcaa
ttgctgaatgaagttgaaagcggtcataaggccattaatgtccttttatcacgtgaggaa
acttatgcagacatcagtccggtccgcttgaacggaaatggcattacggcctttatttca
attatgcggggttgcgacaacatgtgttccttttgcgtggtgccttttacaaggggccgt
gaaagaagccgtgacccacactctatacttgccgaagcgcaggacttatttgaccgtggt
tataaagaagtgactctgctgggacagaatgtagactcttacaaatggaagggtgccgct
actgatgaaaacagggaagcgcaggaaattgaagtgaactttgcccagctgctggaaaaa
gttgcactgatcagtcctgaactccgggtcaggttttctacctcacaccctaaagacatt
acagacgaggtgttatacaccattgccaaatacgaaaacatttgtaactatatccacctg
ccggtacaatcgggcagtacacgggtactggaactgatgaaccggacttatacacgagaa
tggtacatcaacaggatagatgccatcagacagattatacctgattgtgccatttcttcg
gatatcattgccggattctgtacggaaacagaagaagaacaccaggaaacactcagtatc
atggactatgtgggctatgattttgcctttactttcagctattcggaaagaccaggaaca
ctggccgccagaaaactggaggacgatgttcctgaagaagtaaaaaaacgcaggctggca
gaaattttagctaaacaacaggaaacttctttgttccgtttgcaacaatttgttggaaaa
actgttaagattttggtagaaggtacctctaaaaaatctgacagggatttctgtggcaga
aatgatcagaatgcaatggttgttttccctgctactgcaggaattaaagccgggcaatat
gtaaatgtgcatattgaccgttgtacctctgcaacacttcttggaactgtagtggtacaa
gaagaggcagcagtttaa
DBGET
integrated database retrieval system
