Pedobacter heparinus: Phep_0629
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Entry
Phep_0629 CDS
T00978
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
phe
Pedobacter heparinus
Pathway
phe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Phep_0629
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phe03021
]
Phep_0629
03400 DNA repair and recombination proteins [BR:
phe03400
]
Phep_0629
Enzymes [BR:
phe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Phep_0629
Transcription machinery [BR:
phe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Phep_0629
DNA repair and recombination proteins [BR:
phe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Phep_0629
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
RAD51D_N
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ACU02851
UniProt:
C6Y0U0
LinkDB
All DBs
Position
735771..736763
Genome browser
AA seq
330 aa
AA seq
DB search
MAILAFQKPDKVIMQKSTDFDGTFEFRPLEPGFGVTIGNALRRILLSSLEGYAITSIRFS
GVSHEFSTIKGVVEDLTEIILNLKQVRFKKSGDAGDSEKVFILVNGQEQFVAGDITKFSN
NFEVLNPDFVICNMEKSVTLEVELTINKGRGYVPAEENKINDAVVGVIAIDSIFTPMKNV
KYTIENYRVEQKTDYEKLILDISTDGSIHPEEALKEAAKILIQHFMLFSDENLVLESQAK
EETKEVDEEILHMRKILKTELVDLDLSVRALNCLKAADIRTLADLVSYDVADMLKFRNFG
KKSLTEIQELVKSKSLSFGMNLSKFKLDEE
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcaattttagcatttcagaaacccgataaagtaatcatgcagaaatcaactgatttc
gatggtacatttgagttccgtcctttagagcccggtttcggtgtaacaattggtaatgcc
ttgagaagaatattgctttcttctttagaaggttatgccattacaagtattcgtttttca
ggggtatctcatgagttttctaccataaaaggcgttgtagaagatttaacagaaatcatt
cttaatttaaaacaagtgcgttttaaaaaatcaggagatgccggtgactcagagaaagtt
tttattttagttaatggacaggagcagtttgttgctggcgacattactaaattctctaat
aacttcgaggtgcttaaccctgatttcgttatttgtaacatggagaaatctgttacttta
gaagtggaattgaccattaataaaggacgtggttatgtacctgcagaagagaataaaata
aatgatgctgttgttggtgtgatcgcaatcgattcgattttcacgccaatgaaaaatgta
aagtacactatagaaaactatcgtgttgaacagaaaacagattatgaaaaattaatattg
gatatctctacagatggctcaatccatccggaagaagcattaaaggaagctgcgaaaatc
ttaatccagcattttatgcttttctctgatgagaatttggtattggagtctcaggcgaaa
gaagaaacgaaagaggttgatgaggaaatcttgcacatgcgtaagatcttaaaaactgaa
ttggttgatttagatctttcagtacgtgcattgaactgcttaaaggcagctgatatccgt
acgcttgctgatctggtttcttatgatgtggctgatatgttgaaattcagaaacttcggt
aaaaaatccttaactgagatccaggaacttgttaaatctaaaagtttatcgtttggtatg
aacttgtctaagtttaaactggacgaagaataa
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