Pedobacter heparinus: Phep_0668
Help
Entry
Phep_0668 CDS
T00978
Name
(GenBank) tRNA pseudouridine synthase A
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
phe
Pedobacter heparinus
Brite
KEGG Orthology (KO) [BR:
phe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
phe03016
]
Phep_0668
Enzymes [BR:
phe01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
Phep_0668
Transfer RNA biogenesis [BR:
phe03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Phep_0668
Prokaryotic type
Phep_0668
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Bromo_TP
Motif
Other DBs
NCBI-ProteinID:
ACU02890
UniProt:
C6Y1B4
LinkDB
All DBs
Position
777501..778286
Genome browser
AA seq
261 aa
AA seq
DB search
MQRYFIELSYDGTPYHGWQIQPNATTVQEYLDSALTVYFRQPVSTLGCGRTDTGVHASQF
FAHFDLQTEAEQSEATGIPASKCPDPLRSVNGINALLPYQIAVKRVFEVANTAHARFDAT
ARAYHYHIHFHKNPFKLNRSWFHKGELDMDAMNRAASILLAHSDFSCFSKSHTQTFTNNC
KITEAFFEEMEDGALRFTIRADRFLRNMVRAIVGTLIRIGKNELNLAEFEQIIKSKNRSN
AGQSVPACGLYLVNVIYPFVK
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgttattttatcgaattgtcttacgacggcaccccatatcatggctggcagatc
cagccaaatgcgaccactgtgcaggaatatttggacagcgcactgactgtttattttagg
cagccggtaagtacgttaggctgcggacgtacagataccggtgtccatgccagccagttc
ttcgcacacttcgacctgcaaactgaagccgaacaaagtgaggccacaggtataccggcc
tcaaaatgccctgacccattgcgttcagttaatggtattaatgccctgctgccttaccag
attgcagtaaaacgtgtttttgaagttgcaaataccgcccatgcccgttttgatgctaca
gcgcgcgcctaccattaccacattcattttcataaaaacccttttaagctgaaccgttcc
tggttccataaaggcgaactggatatggatgccatgaaccgggctgccagcatactttta
gctcatagcgatttttcctgcttcagcaaatcacatacccaaacctttaccaataactgc
aaaataacggaggccttttttgaagagatggaagatggcgctttgcggtttaccataagg
gccgacaggtttttaagaaatatggtgcgggcaattgtaggtacactgatcagaattggc
aaaaatgaacttaacttagcagaattcgaacagattattaaaagcaaaaaccgcagcaat
gccgggcaatctgttcccgcctgtggtttgtatttagtaaatgtaatttatccctttgtg
aaataa
DBGET
integrated database retrieval system
