Pedobacter heparinus: Phep_1222
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Entry
Phep_1222 CDS
T00978
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
phe
Pedobacter heparinus
Brite
KEGG Orthology (KO) [BR:
phe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phe03032
]
Phep_1222
03400 DNA repair and recombination proteins [BR:
phe03400
]
Phep_1222
Enzymes [BR:
phe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Phep_1222
DNA replication proteins [BR:
phe03032
]
Prokaryotic type
DNA Topoisomerases
Phep_1222
DNA repair and recombination proteins [BR:
phe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Phep_1222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
ACU03439
UniProt:
C6XS94
LinkDB
All DBs
Position
1440870..1441919
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AA seq
349 aa
AA seq
DB search
MTGSPEEIKEIGLVYLTDSQPGIYRKGKPGKFYYTDNHGNRITDPGQLDRIKALVLPPAW
TGVWIAPKKNAHLQATGMDAAGRKQYKYHAVWTSRRSDSKYFRLLEFGKVLPQARKRIAK
DLRRKELDEQKVLAICVQLMQKTLIRVGNEAYKQLYGSYGLSTLKDKHVKINGHAMKLSF
VGKKGVKQEVVLNDKTLSRLVKKCRDIPGQDLFQYYTNGNEHKPVDSGRINNYIKEITGS
DFTAKDFRTWGGTLEALRQLAVCSIAADERPKKKLVVEVLDCVAAKLGNTRAVCKSSYVY
PLLLQTFEDNQLDKYLKMISTDQPDTIKALENDEKVLMKFLRAAQKNKL
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgacaggcagtcccgaggaaattaaagaaattggtctggtttacctaacagatagccag
ccagggatatacagaaaggggaagcccggaaaattttattatacagacaaccatggtaac
cgcattaccgatcccggtcagctcgacaggatcaaagcattggtgctgcccccggcatgg
accggggtttggattgcaccaaagaaaaatgcgcatttgcaggctaccggtatggatgca
gcgggtcggaaacagtataaatatcatgcagtgtggacttcccgcaggtcggacagcaaa
tatttcagactgctggaatttggtaaagttttgccccaggcccgtaaaaggatagctaaa
gatttgcggagaaaagagctggatgaacagaaagtgctggcaatttgtgtacagctcatg
caaaaaacattgatccgtgtgggtaatgaggcttataaacagctatatgggagttacgga
ttaagtactttaaaagacaaacatgtgaaaattaatggccatgccatgaaattgagtttt
gtgggaaaaaaaggcgtgaaacaagaggtcgtactgaacgataaaaccctcagcaggttg
gtaaaaaagtgcagggacattcccgggcaggatctttttcagtattataccaatggcaat
gaacataagcccgtagattccggacggattaacaattacatcaaagaaattaccggaagt
gattttacggcaaaagatttccgtacctggggtggtacactggaggccctgaggcagctg
gcagtttgcagtattgccgctgatgaaaggccaaaaaagaaattggtagtggaagtgctg
gattgtgtggccgcaaaactgggcaatacgcgtgcagtttgcaaaagttcgtatgtttat
cccttactgctgcagacctttgaggataatcagctggacaaatacctgaaaatgatcagt
acagatcagccggatacaattaaggccctggaaaatgatgaaaaagtattgatgaagttt
ttaagggccgcccaaaagaataaattgtag
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