Pedobacter heparinus: Phep_1854
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Entry
Phep_1854 CDS
T00978
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
phe
Pedobacter heparinus
Pathway
phe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Phep_1854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phe03019
]
Phep_1854
03016 Transfer RNA biogenesis [BR:
phe03016
]
Phep_1854
Enzymes [BR:
phe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Phep_1854
Messenger RNA biogenesis [BR:
phe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Phep_1854
Transfer RNA biogenesis [BR:
phe03016
]
Prokaryotic type
tRNA degradation factors
Phep_1854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
KH_1
PNPase
S1_RRP5
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
ACU04062
UniProt:
C6XVJ6
LinkDB
All DBs
Position
2143281..2145431
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AA seq
716 aa
AA seq
DB search
MNVIKKSFDLGDGRTIEIETGKLAKQADGAVVVKMGDTMLLATVVSTVGAKAGVDFLPLS
VDYQEKYAAAGRIPGGFLRREARLSDYEVLISRLVDRALRPMFPEDYHSDTQVMISLISS
DKNIMPDCLAGLAASAAIAVSDIPFNGPISEVRVARIDGKFVINPYVTDLERADIEFLVA
GTEKDIVMVEGECNEISETEMVEAIEFAHKAIVIQVQAQKELAELVGKTVKREYSHEDSN
PELKEQVYAATYDKVYAIAKSNTSKGERGDAFGQVLMDFIATLGEEIDDVTGFLAKKYFH
DVQYDAIRNLVLDEGIRLDGRDVRTVRPIWSEVGYLPAAHGSAVFTRGETQSLTTVTLGS
KDDEQMIDGAFINGYNKFLLHYNFPGFSTGEVRPNRGAGRREIGHGNLAMRSLKKVLPGL
EENPYTIRIVSDILESNGSSSMATVCAGTLALMDAGVKIKAPVSGIAMGLITDEKSGKYA
ILSDILGDEDHLGDMDFKVTGTEKGIVACQMDLKINGLKWEVLTNALNQAKEARLHILNE
MKKTIAAPREDYKAHAPRIVSLSIDKEFIGAVIGPGGKIIQEMQRETGATISIEEVGNKG
IVEIFADNKAAIDAAVGRINAIAAKPEIGATYQGKVKSIMPFGAFVEIMPGKDGLLHISE
IDWTRLETMDGVFKEGDKVEVKLLDVDKQGKMKLSRKALLPRPPKPEAAAATENKA
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtaataaaaaaatcgttcgatctgggcgatggaagaacaatcgaaattgaaaca
ggaaaactggccaaacaggctgatggtgctgttgttgttaaaatgggtgacaccatgctt
ttagctactgtagtttctactgtaggtgctaaagctggggttgattttttacctttatcg
gtagattaccaggagaaatatgcagccgcagggcgtatacctggtggtttccttcgccgc
gaggccaggttgtctgactatgaagttttaatttcacgtttggtagaccgtgctttacgt
ccgatgttccctgaagattatcactccgatacccaggtgatgatctccctgatctcttct
gataaaaatataatgcctgattgtttggctggtttagctgcttcggctgctattgcggtt
tcagatatccctttcaatggaccaatttctgaggtacgtgtggccagaattgatggtaaa
tttgtgatcaatccttatgtgactgatttagagcgtgctgacatagaattcctggttgcc
ggtacagagaaagacatcgtaatggtagaaggtgagtgtaatgagatttctgaaactgaa
atggttgaagcaatcgagtttgcacacaaagcgatcgtgatccaggttcaggcacaaaaa
gaactggctgaactggtgggtaaaactgttaaacgtgagtattctcatgaagacagcaac
cctgagttaaaagaacaggtttatgccgctacttatgataaagtatatgccattgcaaaa
agcaacaccagtaaaggtgaaagaggtgatgcttttggtcaggtgctgatggatttcatt
gctacattaggcgaagaaattgatgacgtaaccggctttttggctaaaaaatatttccac
gatgttcaatatgacgccatccgtaacctggtactggatgaaggtatccgtttagatggc
cgtgatgtacgtacagtgcgcccaatctggagtgaagttggttatttgcctgctgcacac
gggtctgcagtgtttacacgtggtgaaacccaatctttaactacggttacactgggttct
aaagatgatgaacaaatgattgatggtgcttttattaatggatacaataaattcttattg
cactacaattttcctggtttctcaactggtgaagttcgcccgaacaggggtgcaggccgt
cgcgagattggccacggtaacctggctatgcgttctttgaaaaaggtattgcccggactg
gaagaaaatccttataccatacgtattgtttctgatatcctggaatctaatggttcttcg
tcaatggcaactgtttgcgcaggtactttagcactgatggatgccggtgtgaaaatcaag
gcgcctgtttcgggtattgctatgggattgatcaccgacgagaaaagtggtaaatatgct
atcctttcggatattttaggtgatgaagatcatttaggagatatggacttcaaagttacc
ggtactgaaaaaggcattgttgcctgccagatggacctaaagatcaatggcttgaagtgg
gaagtgttaaccaatgctttaaaccaggctaaagaagcacgtttacacatcttaaacgag
atgaaaaaaacgattgctgcaccacgtgaggattacaaagcacatgcaccacgtattgtt
tcactgagcatcgacaaagaatttattggtgcggtaattgggccaggcggtaaaattata
caggaaatgcaacgcgaaactggcgctaccatctctattgaagaagtgggcaacaaaggt
atcgttgaaatttttgctgacaataaggctgctattgacgctgctgttggccgcattaac
gcaattgctgcaaaaccggaaattggtgccacttaccagggtaaagtaaaatctattatg
ccgtttggtgcttttgtagagatcatgccgggtaaagatggcttactgcacatttctgaa
atagactggacacgtttggaaacgatggacggtgtgtttaaagaaggtgataaagttgaa
gttaagctcctggatgtggataaacaaggtaaaatgaagctttccagaaaagccttattg
ccgcgtccgccaaaacctgaagctgcagctgctactgaaaataaagcatag
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