Pedobacter heparinus: Phep_1888
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Entry
Phep_1888 CDS
T00978
Name
(GenBank) Exonuclease RNase T and DNA polymerase III
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
phe
Pedobacter heparinus
Pathway
phe03030
DNA replication
phe03430
Mismatch repair
phe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Phep_1888
03430 Mismatch repair
Phep_1888
03440 Homologous recombination
Phep_1888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phe03032
]
Phep_1888
03400 DNA repair and recombination proteins [BR:
phe03400
]
Phep_1888
Enzymes [BR:
phe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Phep_1888
DNA replication proteins [BR:
phe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Phep_1888
DNA repair and recombination proteins [BR:
phe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Phep_1888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
ExoX-like_C
RNase_H_2
QSregVF_b
Motif
Other DBs
NCBI-ProteinID:
ACU04096
UniProt:
C6XW17
LinkDB
All DBs
Position
2182184..2183170
Genome browser
AA seq
328 aa
AA seq
DB search
MKLNLKRPLAFFDLETTGVNVGADRIVEIAILKAMPDGSELIKTMRINPEMPIPLYASLI
HGIYDEHIANEPIFKEVATELADFIGDADLAGYNSNRFDIPVLLEEFLRAGVDFDMSDRK
FVDVQNIFHQMEQRTLRAAYKFYCNKDIINAHSAEADITATYQVLLAQIERYKDIDFEDK
QGNISRPVQNDVEALHAFTNMNKPVDFAGRMVYNENDEETFNFGKHKGKTVEQVFDIEPS
YYAWMKQGDFPLYTKKKLEEIWTRWNKKKEQLKLERQQQAEANRPKNPQPVKVQQNPAKP
QHQQPKKEKPAAELTNDMLEQLKMKFGK
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgaaattgaatttaaaacgcccactcgctttttttgatctggaaaccactggtgttaat
gtaggtgctgatcgtattgtcgaaattgcaatattgaaagccatgccagatggatctgaa
ctgatcaagaccatgcgcatcaatcctgaaatgccgatcccattgtatgcttcactgatc
catggaatttacgacgaacacattgccaatgagcctatatttaaagaggtagctactgaa
cttgctgattttattggtgatgcagacctggcaggctacaactccaacaggtttgatatc
ccggtattgctggaagagtttttaagggcaggggttgactttgatatgtccgacaggaaa
tttgttgatgtgcagaacatatttcatcagatggagcagcgtaccctcagggctgcttat
aaattctattgcaacaaagacatcatcaatgcacattccgcagaagcagatattacggca
acctatcaggtattgctggcacagatagaacgttataaagacattgattttgaggataag
cagggaaatatatccaggcctgtacaaaacgatgtagaggcacttcatgcttttaccaat
atgaacaaaccggttgactttgccggaaggatggtctataatgaaaatgatgaagagacc
ttcaattttggtaaacataagggcaaaactgttgagcaggtttttgacattgagcccagt
tattatgcctggatgaagcagggtgattttcccttatataccaagaaaaaactcgaggag
atctggacccgctggaacaaaaagaaggaacagcttaaactggaaaggcagcagcaggct
gaagcaaacaggccaaaaaaccctcaaccggttaaagtgcagcaaaaccctgctaagcca
caacaccagcagcctaaaaaagaaaaaccagctgctgagctgaccaacgatatgctggag
cagctgaagatgaaatttggaaaataa
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