Pedobacter heparinus: Phep_1987
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Entry
Phep_1987 CDS
T00978
Name
(GenBank) RNA polymerase sigma factor, sigma-70 family
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
phe
Pedobacter heparinus
Pathway
phe02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
phe00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Phep_1987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phe03021
]
Phep_1987
Transcription machinery [BR:
phe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Phep_1987
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r4
Sigma70_r2
HTH_24
HTH_23
Trp_repressor
HTH_Mga
GerE
HTH_20
Sigma70_ECF
MarR
HTH_11
HTH_AsnC-type
NirdL-like_HTH
HTH_29
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-ProteinID:
ACU04194
UniProt:
C6XWB5
LinkDB
All DBs
Position
2295082..2295651
Genome browser
AA seq
189 aa
AA seq
DB search
MADYSKYSDEELFGLLKQDDQKAYLEIYDRYKVLLQNHAIRKLTDMDDVEDILQELFIDL
WDKRAAIYLTTGLVNYLYTAMRNRIFNHFYKKQREGNYLNSLVAVIERGEYVTDLALREK
EYTEIIKAEIDALPERMREVFLLHRNEGLTYKEIAEQLGTSELTVATQVKKSLKTLRLRL
GATGFSMFI
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
atggctgattacagcaaatattctgatgaggaattgtttggcctattaaaacaggacgat
cagaaagcctatttagagatttatgaccggtataaagtattactgcaaaaccatgcgata
aggaaacttacggatatggatgatgtagaggatattttgcaggagctatttatagatctg
tgggataagcgtgctgccatttatttaactactggcctggttaactacctgtatactgca
atgcgcaaccgcatatttaaccacttttataaaaagcagcgggaaggaaattatttaaac
tcacttgtagccgtgatagaaaggggggagtatgtaacagaccttgcactgcgtgaaaag
gaatacaccgaaatcattaaagctgaaattgacgccctgcccgagcggatgcgagaggtt
ttcctgttgcaccgtaacgaaggtttaacctataaggaaattgccgagcagctgggcaca
tcagaacttaccgtggcaacccaggttaaaaagagcctaaaaacgctaagattaaggttg
ggggctaccggattttcaatgtttatttga
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