Pedobacter heparinus: Phep_2064
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Entry
Phep_2064 CDS
T00978
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
phe
Pedobacter heparinus
Pathway
phe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Phep_2064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phe03019
]
Phep_2064
03400 DNA repair and recombination proteins [BR:
phe03400
]
Phep_2064
Enzymes [BR:
phe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Phep_2064
Messenger RNA biogenesis [BR:
phe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Phep_2064
DNA repair and recombination proteins [BR:
phe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Phep_2064
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
GTP1_OBG
Motif
Other DBs
NCBI-ProteinID:
ACU04269
UniProt:
C6XWX5
LinkDB
All DBs
Position
2380995..2383184
Genome browser
AA seq
729 aa
AA seq
DB search
MDVKKSLFDNLQTFFGFDNFKGDQESIITNVLEKKNTFVIMPTGGGKSICYQLPALINEG
TAIVISPLIALMKNQVDQLRAFGGSDSIAHFLNSSLNKTEITQVKSDLLNGQTKLLYVAP
ESLSKQDNIDFLKLIKISFVAVDEAHCISEWGHDFRPEYRKIRQVISGLGEGIPIIALTA
TATPKVQQDIIKNLGMSDATLFKSSFNRPNLFYEIRPKRDVLKEIIRYIKYNTGKSGIIY
CLSRKKVEEVAESLNLNGIKALPYHAGLEPKVRAETQDKFLMEDVEVIVATIAFGMGIDK
PDVRFVIHHDIPKSMEGYYQETGRAGRDGGEGVCIAFYAQKDVDKLAKFMKDKPVSEREI
GTQILKEVIDYAESGVCRRKQILHYFGENFNETGCNCMCDNCKKPKKLFEAEESLLVLLK
LIKKIGEKFDDAHIINVLMGLETAQTIAYEHSKLPEFGLGVVEGENHWKSLVRQAVLNNF
LSKDIDNYGLLGLTNSGRDFIENPYNLKFILNEPIDSAADDDEDDVKHGTGTLDTQLLQL
LKDLRKKIAKQKNVPPFVVFQDPSLEEMCTHYPIAMDELKQISGVGNGKALKFGAPFLEL
IKKYVEDNDIERPIDLIIKTQANKSQLKVSIIQNIDRKIGLEDIARAKGITYDDILKEIE
AIVNSGTKLNLNYFVDEMIDEDRQDEVFDYFQSAENDSIDEALKELGETDYSREEIQLMR
IKFMSELGN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgaaaaagtcgttgtttgacaacttacaaaccttttttggttttgataatttt
aaaggtgaccaggagtcaataattaccaatgttcttgaaaagaagaacacttttgttatt
atgcctacaggtggggggaaatccatatgttaccagttaccagcattgatcaatgaaggg
accgcaattgtgatttccccattgatagcattgatgaaaaatcaggtagatcagctacgg
gcttttggtgggagtgatagtatagcacattttttaaattcctctttaaacaagacggag
attacacaggtaaaaagtgatttattgaacggacagaccaagctgctttatgtggcccca
gagtcgctttccaaacaggataacattgatttcctgaaactcatcaaaatatcttttgta
gcagtagatgaagcccactgtatttcggagtggggacatgatttcaggcctgaataccga
aagatcaggcaggtgatcagcggtttgggtgaagggatccctattattgccttaactgca
acagcaacacctaaagttcagcaggacatcataaaaaacctgggcatgagtgacgccact
ttatttaagtcgtcctttaacaggcccaatctgttttatgagatcaggcccaagcgtgat
gtgctgaaagagattatccgttatattaagtacaataccggaaaatccggtattatttat
tgcctgagccgtaaaaaggtggaggaagtagctgaatctttaaacctgaacggtataaag
gccctgccttaccatgcaggcctggaacccaaggtgagggcagagacccaggataaattc
ctgatggaggatgtagaagtgattgtagccaccattgcatttggaatgggaatagacaag
ccagatgtgcgttttgtgatccaccatgatattcccaaaagcatggaaggatattatcag
gaaacaggaagggcaggcagagatggcggagaaggtgtttgtatagctttttatgcgcag
aaggatgtggataaactggctaagtttatgaaggataaacccgtttcggaaagggaaatt
ggtacacagatattgaaagaagtaattgattatgctgaatccggcgtttgccgaaggaag
cagatcctgcattattttggggagaactttaacgaaaccggctgtaactgcatgtgcgac
aattgcaaaaagcccaaaaagctttttgaagctgaggaatctttattggtgctcttaaaa
ctgattaaaaaaatcggggaaaagtttgatgatgcgcacatcattaatgtgctgatgggg
ctggaaacggcgcagaccattgcttatgagcacagcaagctgccggaatttggattgggt
gtggtggaaggagaaaaccactggaaatctctggtacggcaggcagtgctgaataatttc
ctgtccaaggacatagacaattacgggctgctgggacttaccaattcgggacgtgatttt
attgaaaacccctacaaccttaaattcatactcaatgagccgatagacagtgctgccgac
gatgatgaggatgatgtaaaacatggtaccggaactttggatacgcagctgctgcagctg
ttgaaagacctgcgcaaaaaaatagccaaacaaaaaaatgttcctccgtttgtggttttc
caggatccgtcactggaagagatgtgtacgcattatcccattgcgatggatgaactgaag
cagatctctggcgtgggtaacggtaaggccttaaaatttggagccccttttctggagctg
atcaaaaaatatgtggaagacaatgacattgaacggccaatagacctgatcattaaaacc
caggccaataaatcgcagctcaaagtttcaatcattcagaatatagacaggaaaattggt
ctggaagacattgccagggcaaaagggattacttatgatgatattttaaaggaaattgaa
gcaatagtaaattccggtactaagctgaacctcaattattttgtagatgaaatgatagat
gaagatcgtcaggatgaggtatttgattattttcaatcagctgaaaatgactccattgat
gaagccctgaaagaattgggcgaaacagattattcgcgtgaagaaatccagctgatgcgc
attaaattcatgtccgaattaggtaattaa
DBGET
integrated database retrieval system
