Pedobacter heparinus: Phep_2163
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Entry
Phep_2163 CDS
T00978
Name
(GenBank) DNA gyrase, A subunit
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
phe
Pedobacter heparinus
Brite
KEGG Orthology (KO) [BR:
phe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phe03032
]
Phep_2163
03400 DNA repair and recombination proteins [BR:
phe03400
]
Phep_2163
Enzymes [BR:
phe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
Phep_2163
DNA replication proteins [BR:
phe03032
]
Prokaryotic type
DNA Topoisomerases
Phep_2163
DNA repair and recombination proteins [BR:
phe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Phep_2163
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
Retrotran_gag_2
Motif
Other DBs
NCBI-ProteinID:
ACU04367
UniProt:
C6XXU9
LinkDB
All DBs
Position
2485539..2488148
Genome browser
AA seq
869 aa
AA seq
DB search
MAEDLENQENDKIIRIDIDEQMRSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMLDL
GLANNKPYKKSARIVGEVLGKYHPHGDASVYNTMVRMAQEWSLRYLMVEGQGNYGSIDGD
SPAAMRYTEARFQKIAEDMLADINKDTVDFQLNFDDSLQEPTVLPSKVPNLLINGSSGIA
VGMATNMPPHNITETINATIAYIDNNEITIAELMKFIKAPDFPTGAIIYGYTGVQEAFET
GRGRIVMRAKAEIEAAKDREVIIVTEIPYQVNKAQMIERTAELVGEKKLEGISNIKDESN
KDGIRIVYEIKRDANASIVLNNLFKQTALQTSFSVNNIALVKGRPQLLNLRDLIHYFVEH
RHEVVVRRTKFELAEAKKRAHILEGLLIALDHLDEVIKLIRSSDTPEDARTGLMEKFGLS
DIQARAILDMTLRRLTGLERDKIKDEYNELMKTIEYLQSILDDESKRMQIIKDELTEMKE
KYGDERRTTIVHSAEDMSMEDFIEDEEVVITISHEGYIKRTPATEYRTQGRGGKGSKGSD
SRNEDFIEHLLIASNHNYMLFFTETGRCFWLRVYEIPEGTRLSKGRAIQNIINIPKEEKI
KAFIKVKNLKDQEYLENNYIIMCTKKGTIKKTSLEAYSRPRVNGINAININEGDQLLEAS
LTTGSSEIVMALRSGRAIRFNEEKVRPMGRTATGVRGVTLAHEKDEVVGMIAVDDPGATI
LVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVTDKTGNLVAIKSVTDADDLMIINKSGIV
IRIVVSELRVMGRATQGVRLINLKGNDEIASVARIEHEDEEVEEAESHVVVDGEPAGEVE
EEITEEPTAEEENEEEGDADEDASEEEDN
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagatttagaaaatcaggaaaacgacaaaataatcagaattgatattgacgaa
cagatgcggtcagcttacatcgattattcgatgtcggttatcgtatcgagggctttaccc
gatgtgcgggatggattaaaaccagttcaccgtcgtgtattgtacggtatgctcgatctg
ggattagcaaacaataaaccctataaaaaatctgcacgtattgttggagaggtattgggt
aagtaccatccacatggtgatgcatcggtatacaataccatggtaaggatggcccaggaa
tggagcctgcgttacctgatggtagaaggacagggtaactacggttctatcgatggcgac
tctccggccgctatgcgttatacagaggcccgtttccagaaaattgccgaagatatgctg
gcagatatcaacaaagatacggttgattttcagctaaactttgacgattctctgcaagaa
ccaaccgttcttccctcaaaagtacccaacctgctgatcaatggctcatcaggtattgcg
gtaggtatggccaccaatatgcccccgcataacattaccgagaccatcaatgcgactata
gcttatatcgataacaatgaaatcactatagcagagctgatgaaattcatcaaagcgcct
gattttcctacaggagctattatttacggttatacaggtgttcaggaagcatttgaaaca
ggtcgtggtcgtatcgtaatgcgtgctaaggccgaaattgaagcagcaaaagatcgtgaa
gttattattgtaacggagataccttaccaggtaaacaaggcccagatgattgagcgcact
gcagaactggttggtgagaaaaaactggaaggcatttcgaatatcaaagatgaatctaac
aaagatggtatccgtatcgtttatgagatcaagcgagatgcaaatgcctctattgtttta
aacaacctgtttaagcaaaccgctttacaaacctcattcagtgtaaataacattgcactt
gtgaagggaaggccacaattgttaaacctgagagacctgatccattattttgtggaacac
cggcatgaggtggtggttcgcagaactaagtttgaactggctgaagccaaaaaacgtgca
cacattttagaaggtttactcattgcattagatcatttagatgaagtcatcaaattgatc
cgtagctcagatacgcccgaagatgcgcgtaccgggttaatggagaaatttggcctttcc
gatattcaggcaagagctatcctggacatgaccctgcgcaggctgacaggtctggaacgt
gataagatcaaagacgaatacaatgagttgatgaaaaccattgaatacttacagtctatt
ttagatgatgaaagtaaacgtatgcagatcatcaaggatgagctgacggagatgaaggag
aaatacggagatgagcgcagaacgaccattgtgcattcagccgaagatatgagcatggaa
gatttcatcgaagatgaagaagttgtgatcactatctctcatgaaggctatatcaaacgt
acccctgctacagaataccgcacacaaggcagaggcggaaaaggttcaaagggtagtgat
tccagaaatgaagacttcattgaacatttattgatcgcctctaaccataattatatgttg
ttcttcaccgaaacgggccgctgtttctggttaagggtatatgaaattcctgaaggcaca
aggttaagcaaaggaagggcgatccagaacatcatcaatattcctaaagaagaaaaaatc
aaggcctttatcaaggtgaaaaacctgaaggaccaggaatatctggaaaacaattacatc
attatgtgtaccaaaaagggaacgattaagaaaacctcattggaggcttattccagacca
agggtaaatggtatcaatgccattaacatcaatgagggtgaccagttgctggaagcaagt
ttaactacaggctcaagtgaaatagtgatggccttacgttcaggaagggcaattcgtttc
aatgaagagaaagtgagaccaatgggcagaactgctacgggcgtaaggggcgtaacactt
gctcatgaaaaagatgaagtggttggcatgattgctgtggatgatcctggagcaacgatt
ctggtagtttccgaaaaaggctatggtaaacgtacagatatagaggattaccgtgttacc
aaccggggtggtaaaggtgtgaaaaccattaatgttactgacaaaacaggtaacctggta
gctataaagagtgttaccgacgcagatgacctgatgatcattaacaaatccggtatcgta
atcaggattgtggtaagtgaattgagggtaatgggcagggcaacacagggtgttaggctg
attaacctgaaaggtaacgatgaaattgcctcagttgccagaattgaacatgaagacgaa
gaagttgaggaagcagaaagccatgtagtagtggatggtgaaccggcaggtgaggttgaa
gaggaaataacagaggagccaactgctgaagaagagaacgaagaggagggagatgctgat
gaagatgccagcgaagaagaagataattaa
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