Pedobacter heparinus: Phep_2189
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Entry
Phep_2189 CDS
T00978
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
phe
Pedobacter heparinus
Brite
KEGG Orthology (KO) [BR:
phe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phe03032
]
Phep_2189
03400 DNA repair and recombination proteins [BR:
phe03400
]
Phep_2189
Enzymes [BR:
phe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Phep_2189
DNA replication proteins [BR:
phe03032
]
Prokaryotic type
DNA Topoisomerases
Phep_2189
DNA repair and recombination proteins [BR:
phe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Phep_2189
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
SPAR
Motif
Other DBs
NCBI-ProteinID:
ACU04393
UniProt:
C6XXX5
LinkDB
All DBs
Position
2512997..2515570
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AA seq
857 aa
AA seq
DB search
MAKNLLIVESPAKAKTIEGYLGKDFLVKSSYGHIRDLVKGDMAIDTANNFAQTYEVPSDK
KQVVAELKKLAKDAEMVWLASDEDREGEAISWHLYETLGLKENKTKRIVFHEITKPAILK
AIETPRSIDYNLVNAQQARRVLDRLVGFELSPVLWKKIKPSLSAGRVQSVAVRLIVDRER
EVNKFNAAAAFKITAEFVTGNGKELVKAELPQRFEKEADAEKFLNDCAGAGFSVDSLETK
PAKRNPAAPFTTSTLQQEASRKLGYSVSRTMQIAQRLYESGRITYMRTDSVNLSETALQA
AASEIRSAWGDKYHQPRTYKTKSAGAQEAHEAIRPTYFNQHTVPGDSSEQRLYELIWKRA
IASQMSEALFEKTTAQIGISTRKEQLIAEGEVLKFDGFLKVYLESSDEEDAEDSEGNNML
PALSRGQALTLKVMNATERFSRPPARYTEASLVKKLEELGIGRPSTYAPTISTIQNRGYV
VKEDRDGRQRSFAAIELSNGSVTKKTKTEITGAEKGKLFPTDIGEVVNDFLVEHFKGIVD
FNFTANVEKEFDEIAQGLQEWTKMLHSFYTPFHLEVENTLETADRANGERLLGLDPATGK
NVYTKVGRFGPLVQIGENDDEEKPRYASLSKSQSVGTVTLEEALEQFKLPFSLEDYQGKE
VSVGVGRFGPYVKWGDAFISVPKNEDPLSIDQARAIEIIGEKITADAPVAHYQGMPVTKG
TGRFGPFIKWNDLFINVPKAYNFDRLSQQDIEELIGKKIEKEANRFIQQWPAEKIAIENG
RWGPFIRFGKEMLKLRKNPATNDKYTPEELASIALDEVKKLIVEQVPNAFEPKKKAAAKK
TGAAKKAPAKKKAVAKK
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaaatttattaatagtagagtcacctgcaaaagcaaaaaccatcgaagggtat
ttaggtaaggattttttagttaaatcgagttacgggcacatccgtgatttggttaaaggg
gatatggcgattgatactgccaataattttgcccagacctatgaagtgccgtccgataag
aagcaggtggttgcagaacttaagaaattggccaaagacgcagaaatggtatggctcgca
tccgatgaggaccgcgaaggagaagccatatcctggcatttgtatgaaaccctgggactg
aaggaaaataagaccaaaaggattgtttttcatgagatcaccaagcccgccatattaaaa
gcaatagaaaccccgcgcagcatagattacaacctggttaatgcccagcaggctcgcagg
gtgctggacaggctggtaggttttgaactttcgccggtattatggaaaaaaattaagcct
tctttgtcggccgggcgtgtacagtctgtcgccgttcgcctcattgtcgacagggaacgt
gaagtcaataaattcaatgctgctgcagcatttaaaattactgccgaatttgttaccggt
aatggaaaagagctggttaaagcagagctgccacagcgttttgaaaaagaagctgatgca
gaaaagtttttgaacgattgtgcaggggccggtttttcggtcgacagcctggaaacaaag
cccgccaaacgtaatcctgcagcgcctttcaccacctctaccctacagcaggaagcttcg
cggaagctgggctattcggtaagcaggacgatgcagattgctcaaaggctatacgaaagt
ggaagaataacctatatgaggacagattcggtgaatttgtcggaaaccgctttacaggct
gcggccagcgaaatcaggtcggcctggggcgataaataccatcagccaagaacttataaa
acaaaatctgctggtgcacaggaggcacacgaggccatccgccctacttatttcaaccag
cataccgtgccgggcgacagttcggagcaacgcctgtatgagctgatctggaaaagagcc
attgcctcacagatgagtgaagcgctgtttgaaaaaactaccgcacagatcggtatcagc
acccgtaaggaacagctgattgcagaaggtgaagtgttgaaatttgatggctttttaaaa
gtatacctggaatcttcggatgaagaggatgcggaagattcggagggcaacaatatgctt
ccagcactttcaaggggacaggcgctgactttaaaagtgatgaatgcaacggaaaggttt
tcgagaccgccggcaagatatacagaggcttcattggttaagaagctggaagagctgggt
ataggcaggccttctacttatgcgccaaccatctctaccatccagaaccgcggatatgtg
gttaaggaagaccgtgatggccgccagcgtagctttgcagccatagaactgagcaatggt
tcggtaaccaaaaagacaaaaacagaaattacgggtgctgaaaaaggcaagctcttccct
acggacattggcgaggtggtgaacgatttccttgtagaacattttaaaggtattgttgat
tttaactttacagcgaatgtagagaaggagtttgacgagattgcgcagggcctgcaggaa
tggacaaaaatgctccactccttttatacgccctttcacctggaagtagaaaatacgctg
gaaacggccgacagggccaatggagagcgcttgctgggactggacccggcaactggtaaa
aatgtttacaccaaggttggccgctttggcccgctggtacagatcggtgaaaatgacgat
gaagaaaaaccacgttatgccagtttgtccaaatcgcaatcggtaggtacagttacactg
gaagaggctttagagcagtttaaacttcctttttctttagaagattatcagggtaaagaa
gtttctgttggagttggccgttttgggccttatgtgaaatggggcgatgcctttatttct
gtaccaaagaacgaagacccattgtcgatagaccaggcgcgtgccatagagatcattggc
gagaaaattacggccgatgcaccggtggcacattaccagggcatgccggttaccaagggt
acaggcaggtttgggccttttatcaaatggaacgacctgtttatcaatgtgccaaaggcc
tataatttcgacaggctttcgcagcaggatattgaggagctgatcggtaaaaagatcgaa
aaagaggccaacaggtttatccagcaatggcctgccgaaaagatcgcgatcgaaaatggc
agatggggaccctttatccgttttggcaaggaaatgctgaaattgcgtaaaaacccggcc
acgaatgataagtatacccctgaggaactggcatcaattgctttggatgaagtgaagaag
ctgattgtagagcaggtgccaaatgcatttgaacctaaaaagaaagccgctgcaaaaaaa
acgggagctgcgaagaaagcacctgcaaaaaagaaagcagtagcaaagaagtaa
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