Pedobacter heparinus: Phep_2246
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Entry
Phep_2246 CDS
T00978
Name
(GenBank) RNA polymerase sigma factor, sigma-70 family
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
phe
Pedobacter heparinus
Pathway
phe02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
phe00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Phep_2246
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phe03021
]
Phep_2246
Transcription machinery [BR:
phe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Phep_2246
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
HTH_11
Sigma70_r2
GerE
HTH_23
HTH_24
HTH_38
PF0610-like_N
HTH_10
HTH_40
HTH_36
HTH_17
HTH_ParB
Xre-like-HTH
MarR
HTH_3
HTH_AsnC-type
YfjL_C
HTH_29
HTH_5
Sigma70_r3
DUF134
HTH_Tnp_4
HTH_Tnp_ISL3
HTH_Crp_2
DUF7646
HTH_22
Motif
Other DBs
NCBI-ProteinID:
ACU04450
UniProt:
C6XY32
LinkDB
All DBs
Position
2607323..2607895
Genome browser
AA seq
190 aa
AA seq
DB search
MTDQELWKAIREDDPRAFAVLFEKHWSKIYTTAFSMLKDAEACSGIVHDIFLNLWIKREH
LNIASFPAYLKAAARYHVYKYIKSLKASPIDYTDEPLSLEKAVSQNTGDERIRYMELENK
VELYLKELPKRCQEIFILSRKENLSNEEIAKRLGISKRTVENQLTHALHHLRISMKDLIV
VLILLEIMGR
NT seq
573 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatcaggaactttggaaagcaatcagggaagatgaccccagggcatttgctgtg
cttttcgagaaacattggtctaaaatttacaccacggcattctccatgctgaaagatgct
gaggcctgctctggaattgtacacgatattttccttaacctctggatcaaaagagaacac
ctgaatatagcatcttttcctgcttacctgaaagctgctgcgcgctaccatgtttacaaa
tatatcaaaagcttaaaggccagccctatcgattataccgacgagcccctatccctggaa
aaggcagtcagccagaataccggtgatgagcgtatcaggtatatggaactggaaaataaa
gtggaactctacttaaaggaattgcctaagcgctgccaggagatctttatactgagcaga
aaagaaaacctgagtaatgaggaaattgccaaacgcctgggcatttcaaaaagaacagta
gaaaatcagctcacccatgcactccatcatttacggatctctatgaaagacctgattgtg
gtccttatcctgctggaaattatgggccgctag
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