Pedobacter heparinus: Phep_3032
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Entry
Phep_3032 CDS
T00978
Name
(GenBank) alanine racemase
KO
K01798
Alr-MurF fusion protein [EC:
5.1.1.1
6.3.2.10
]
Organism
phe
Pedobacter heparinus
Pathway
phe00300
Lysine biosynthesis
phe00470
D-Amino acid metabolism
phe00550
Peptidoglycan biosynthesis
phe01100
Metabolic pathways
phe01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
phe00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Phep_3032
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Phep_3032
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Phep_3032
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
Phep_3032
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
phe01011
]
Phep_3032
Enzymes [BR:
phe01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.1 alanine racemase
Phep_3032
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.10 UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase
Phep_3032
Peptidoglycan biosynthesis and degradation proteins [BR:
phe01011
]
Precursor biosynthesis
Amino acid ligase
Phep_3032
Racemase
Phep_3032
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ala_racemase_N
Ala_racemase_C
Mur_ligase_M
Mur_ligase_C
RuvA_C
Motif
Other DBs
NCBI-ProteinID:
ACU05230
UniProt:
C6Y2M0
LinkDB
All DBs
Position
complement(3623625..3626078)
Genome browser
AA seq
817 aa
AA seq
DB search
MSSLIYNIKHIAGILGIKNFEVQKDAIISKLVIDSRSVIDPDGSLFFALKGQRDGHGFLK
DAYANGIRNFVISEAKYTRLFPDANILLVQDVLLALHTIAKYNRNQYDLKVLGITGSNGK
TIVKEWLYQLLAADHNIVRSPKSFNSQIGVPLSVWEITAIHTLGIFEAGISKTDEMDALA
SMIKPNVGILTNVGEAHAEGFVSLKEKLLEKLKLFNDADLFIYAPEYTAGLSTDDLPGKT
KFSWSKKQQADLQILFVEPIDGKNYIRADFKGIEIECLIPFSDQASVENGIICWATLLAL
GYTPEEADKRLEKLTRVSMRLELKNGINQCSVIDDSYSADISSLAIALDFLNLQNQHPKK
TLILSDIYETGKTNRVLYTEIAALLKQKHVDRLIGIGTHISESASLFDMEASFYESTQAF
IDNFPALHFNNETILVKGARRFEFERISKLIAQKVHDTVMEIDLNALAGNLQFYRSKLLP
GVKVMAMVKAFSYGSGSFEIANLLQYHKVDYLAVAYTDEGISLRKAGITLPIMVMSPEPS
AFDAIIRYNLEPEIYNIEILQGFIGFLKTDQYPIHLKIDTGMHRLGFEEPDLSDLLKVLT
ETRKVKVASVFSHLVGSEDGLHDEFTRHQIERFTAMTELISETLHYPFIRHISNTSGISR
HPETQLEMVRLGIGLYGFDAALKNNTALQTVAILKTTITQIKHLKPNETVGYGRKGLLPK
GGTIATVKIGYADGYSRAFGNGTGRMLIKGKLVPTVGVICMDMCMLDVTGLDVKTGDEVI
VFNNELSIAQLATQIGTIPYEILTNVSQRVKRVYFYE
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtctcatttacaacatcaaacatattgcaggtattctgggtataaaaaacttt
gaagtacaaaaggatgcgatcatcagtaaacttgtgattgacagcagaagtgtaatagat
ccggatggctctttattttttgctttaaagggacaaagagatggacatggatttttaaaa
gatgcttatgccaatggaatccggaactttgtgatcagtgaggctaagtataccagattg
tttcctgacgccaatattttgcttgttcaggatgtgttactcgctttacataccatcgct
aaatataatcgtaaccagtatgatttaaaagtacttggtataaccggaagcaatggtaag
accattgtaaaggaatggctgtatcaattactggctgctgatcataacattgtacgcagt
cccaaaagttttaactcccagataggtgtacctctatctgtatgggaaattacggccata
catacactgggtatttttgaagcaggcatttccaaaactgatgagatggatgccttggcc
agcatgatcaaacctaatgtagggattctgacaaatgtaggagaggcacatgccgagggc
ttcgtttcattaaaagaaaaactgctcgaaaaattaaagctgtttaatgatgctgacttg
tttatttatgctcctgaatatacagcaggattaagtacagatgatttaccaggaaaaacc
aagttctcctggagcaaaaaacagcaagccgatctgcaaatcttatttgttgaaccaatt
gatggtaaaaactatatccgggcagattttaaaggaatagaaatagaatgcctgatccca
tttagtgaccaggcatctgtagaaaatgggatcatctgctgggctaccctgctggccttg
gggtatacacctgaagaagcggataaacgtctggaaaagttgaccagggtaagtatgcgc
cttgaattaaaaaacgggataaaccaatgttctgtaatagatgattcttatagcgccgat
atttcgtccctggccattgcacttgattttctaaaccttcagaaccagcatcccaaaaaa
acgctgatcttgtctgatatttatgaaacaggtaaaaccaatagggtactttatactgaa
attgcagcgctattgaaacaaaagcatgtagacaggctcattggtattggtacccatatt
agcgaatcggcctctttatttgatatggaagccagtttttatgaaagtactcaagcattt
attgataattttcctgcactccattttaataacgaaaccattttagtgaaaggggccagg
agatttgaatttgagcggatcagtaagctgattgcacaaaaagtacacgataccgtaatg
gaaattgaccttaatgcattggcaggtaacctgcagttttaccgcagtaaactactgcct
ggggttaaggttatggctatggtcaaagctttttcttacggcagtggcagtttcgaaata
gccaatttattgcagtaccacaaagtggactatctggctgttgcctatactgatgaaggc
atttcattaagaaaggctggtataacgctacctattatggtaatgagtcccgaaccttct
gcttttgatgccatcatcaggtataaccttgaacccgaaatctataacattgaaattttg
cagggttttattggctttttgaaaaccgaccaatatcctattcatctgaaaattgatacc
ggaatgcatcgactgggatttgaagaacctgatttatctgacttgttaaaggtgttgact
gaaaccagaaaagttaaagtggcttctgtattttcccatcttgtgggaagtgaagatggg
ctgcatgatgaattcacccggcatcagattgaacggtttacagccatgacagaactgatt
agcgaaacactgcactaccccttcatcaggcacatttccaatacttctggtatttcgcgc
catcctgaaacacaactggagatggtacgacttggaattggtctatatggttttgatgct
gcattaaaaaacaataccgccctccagacagttgctatcctaaaaaccaccattacccaa
ataaagcaccttaaaccaaatgaaactgtggggtatggcaggaaaggtctgttgccgaaa
ggtggtacaattgctactgtaaaaattggttatgccgatggttacagtcgtgcctttgga
aatggaacaggtcgcatgctgatcaaggggaaacttgtacccactgttggagtaatctgt
atggatatgtgtatgctggatgtaacagggctggatgtgaaaacaggggatgaggtaatt
gtgtttaacaatgagcttagcattgctcaactggctactcagatcggaactattccttat
gaaattctcactaatgtatctcaaagggtaaaacgcgtgtatttttatgaatag
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