Pedobacter heparinus: Phep_3342
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Entry
Phep_3342 CDS
T00978
Name
(GenBank) DEAD-like helicase
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
phe
Pedobacter heparinus
Brite
KEGG Orthology (KO) [BR:
phe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
phe03009
]
Phep_3342
03012 Translation factors [BR:
phe03012
]
Phep_3342
Enzymes [BR:
phe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
Phep_3342
5.6.2.5 RNA 5'-3' helicase
Phep_3342
Ribosome biogenesis [BR:
phe03009
]
Eukaryotic type
Other ribosome biogenesis factors
Phep_3342
Translation factors [BR:
phe03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
Phep_3342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_30
AAA_19
Viral_helicase1
ResIII
SLFN-g3_helicase
Helicase_RecD
AAA_22
DEAD
UvrD-helicase
PhoH
Herpes_ori_bp
UvrD_C_2
AAA_16
PIF1
T2SSE
TraI_hel_assoc_N
AAA_24
AAA_25
nSTAND3
cobW
ATPase
DAP3
Rad17
AAA_14
AAA_18
Flavi_DEAD
SRP54
ATPase_2
AAA
AAA_7
NPHP3_N
DUF7123
Motif
Other DBs
NCBI-ProteinID:
ACU05536
UniProt:
C6Y493
LinkDB
All DBs
Position
complement(3962238..3964148)
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AA seq
636 aa
AA seq
DB search
MPYFKKLLDLLKTEREEDLQAYIKQKETLSVAERRALGLTWYPIAIRGSEMSRGDYLTVE
VERTTHHDLQHQLRFGMPAVLFSNHDPKNDKVEGLIAYQGGSRLKITLCTDELPDWARNG
KLGIDVLFDDHSYDEMQAAVKRASVQNEQADNHHLIKILTGIDKPSFAEDVVHYPVAKLN
KVQQLAVYHIVAAQQLAIVHGPPGTGKTTTLVQAVKTMIKQHGRQILVVAPSNTAVDLLS
EKLADEGLNVLRIGNPVRVSEKLFSLTLDSKMSAHASIKEVKDLKKQAAEYKKMAHKYKR
NFGRAEKEQRKALFDEAHKLMKAVAGAEQYIIEDLIGKAQVVTATLVGANHYTIKDRKFD
TVVIDEAGQALEPACWIPILKAQKVILAGDHCQLPPTIKSNDAAKAGLSTTLLEKCIALH
PNAVVLLEEQYRMHTQIMAYSSKVFYEGKLKAHAAVAGHLLFPGDTALNFIDTAGCGFEE
QREGTSIYNSEEAVFLLKHLTQLVLKLAEVYVAENFPSIGVISPYKQQIYILKDLLLNHP
VLQLYIEKISVNTIDSFQGQERDIVYIGMTRSNNEGVIGFLSDIRRMNVAMTRARKKLVV
IGDSATLSRLPFYSDFIAYAESIDAYRSAWEFADAD
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgccttactttaagaaactgcttgatctgcttaaaacggagcgtgaagaggacttacaa
gcatatatcaaacagaaggaaaccctttctgttgcagaacgcagagcacttgggttaacc
tggtatcctattgctatccgaggttcggaaatgagcaggggtgactatttaactgttgag
gttgaacggactacgcaccatgatttgcaacatcagcttcggtttggcatgccagcggta
ctgttttctaatcacgatcctaaaaatgataaggttgaggggctgattgcttatcaggga
ggaagtcgtttaaagatcactttgtgtacggatgaactgccagattgggcaaggaacggt
aaattaggcattgatgtactgtttgatgatcacagttatgatgaaatgcaggcagctgtt
aaacgtgcttcagtacagaatgagcaggctgacaatcaccatttaataaagatattgacg
gggatagataagccttcgtttgcagaagatgttgttcattatccagtcgctaaattaaat
aaagtgcagcaacttgctgtgtaccatattgttgctgcacagcaactcgctattgtacat
ggtccgccgggaacaggtaagaccactacacttgtgcaggctgttaagacaatgattaaa
cagcatggaaggcagattttggtagttgcaccgagtaatacagcggtagatttattaagt
gaaaagttagctgacgagggattgaatgttttacggattggtaatccggtaagggtatca
gaaaaattgttctctttaactttggatagtaaaatgtcagctcatgccagcataaaagag
gttaaggatttgaaaaagcaggctgcggagtacaaaaagatggcccataaatacaaaaga
aattttgggagggcagaaaaggaacagcgtaaggcactttttgacgaggcgcataagctg
atgaaagctgtagccggtgccgaacaatatataatagaagatctgatagggaaagcgcag
gtagttacagcaactttagtaggcgcaaatcattatactattaaagataggaaatttgat
accgtagtaattgatgaagccggacaggcattggaacctgcatgctggataccaatattg
aaggcgcaaaaggtgattctggcaggcgaccattgtcaattgccgcccaccattaagtct
aatgacgctgcgaaagcaggtttaagcaccactttgcttgaaaaatgtattgctttgcat
ccaaatgcagttgttttgctggaagaacagtacaggatgcatacgcagattatggcctat
tcttcgaaggtcttttacgaaggaaaattaaaggcgcatgcggctgttgccgggcatttg
ctatttccgggagatactgcattaaactttattgatactgccggctgtggatttgaagaa
caaagggaaggaacaagtatttataattctgaagaagctgtatttttactgaaacactta
acacagttggtgctgaagctggctgaggtgtatgttgctgaaaattttccttcaatagga
gtgatttcgccctataaacaacaaatctatatattaaaggatctgttgttgaaccatccc
gttttgcagctgtatattgaaaaaatttcagtcaatacaatagacagctttcaaggccag
gagcgggacattgtctacatcgggatgaccagaagtaacaatgagggagtgattggcttt
ttatcggatatccgcaggatgaatgtagctatgaccagggcccgtaaaaagctggtggtt
ataggagacagtgcaactttatccagattgcctttttattcggattttattgcttatgca
gaaagcattgatgcttaccggagtgcatgggaatttgctgatgcagactaa
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