Pedobacter heparinus: Phep_3476
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Entry
Phep_3476 CDS
T00978
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
phe
Pedobacter heparinus
Pathway
phe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Phep_3476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phe03019
]
Phep_3476
Enzymes [BR:
phe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Phep_3476
Messenger RNA biogenesis [BR:
phe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Phep_3476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
DUF758
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
ACU05669
UniProt:
C6XSV6
LinkDB
All DBs
Position
4138693..4140006
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AA seq
437 aa
AA seq
DB search
MLFKELNLIEPILNALQTEGYTQPTPIQEQAIPSILQNRDLLGCAQTGTGKTAAFAIPML
QLLSKPHTNTKIHKVIKALVLTPTRELAIQIEESFKAYGKNLPIRHLVIFGGVGQKAQTD
ALHRGVDILVATPGRLLDLMNQGFINLRDIEIFVLDEADRMLDMGFIHDVKKVIAKLPAK
RQTLFFSATMPKEIQGLADTILTNPVKVEVTPVSSTAEKIRQEIFYVEKGDKKGLLMHIL
QDKTIETALVFARTKHGADRIVKDLIKVGVKAEAIHGNKSQNARQRALTNFKAKTTRILV
ATDIAARGIDVDELSHVINYELPNIPETYVHRIGRTGRAGLSGTALSFCDAEEKEFLDDI
EKLIGLKLPVTEDHPFAMSWQSLLSGAAAAKTKGKTKPSRGQRSERTSRPEKKEHEPNLS
GAKKTPGGSGNRRWWKK
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
ttgttattcaaagaattaaacctgattgagcccattttaaacgcgctgcaaacagaaggt
tatacacaacctacccccatacaagaacaagccattccatctatactacaaaacagagat
ttattaggctgtgcacaaacaggaacaggaaaaactgctgcttttgccatccctatgctg
caactgttaagtaaaccacacaccaacaccaagatccataaggttattaaagccctggta
ctaacaccaacccgcgagctggctatacaaattgaagaaagttttaaagcttatggcaaa
aaccttccgatcaggcatctcgtgatatttggcggggtaggacaaaaagcacaaaccgat
gccctgcacagaggtgtagacatcctggttgctacccctggccgtttattggacctaatg
aaccaaggctttatcaacttacgtgatattgaaatttttgtgttggatgaagccgacagg
atgctcgatatgggttttatacacgacgtaaagaaagtgattgccaaactaccggctaaa
aggcaaaccttattcttctcggccaccatgccaaaggaaatacagggtctggccgatacc
attcttaccaacccggttaaagtagaagttacccccgtgtcttccactgcagaaaaaatc
cggcaggagatcttttatgtagagaaaggtgacaaaaagggcctgctgatgcacatttta
caggacaaaaccattgaaacagccttggtatttgcccgtacaaaacatggtgcagatcgt
attgtgaaagacctgatcaaagtaggagtaaaagcagaagccatacatggcaacaaatcg
cagaatgcacgacaacgggcattgacaaatttcaaagctaaaacaacacgtattcttgtg
gctacagacattgctgcgcgtggtattgatgtggatgaacttagccatgtgatcaattac
gaattgccaaacattcccgaaacttatgtacaccgtatcggacgcaccggccgtgcaggc
ttaagtggcactgccctatcgttctgtgatgcagaagagaaagaatttttagatgatata
gaaaaactgataggcctcaaacttccggtaacagaagaccatccttttgctatgagctgg
caaagcctgctttcgggtgccgctgcagcaaaaacaaagggcaaaaccaaaccttcaaga
ggccagcgatctgaaagaacttcccgaccggaaaagaaagaacatgaacccaatttaagt
ggtgcaaaaaaaacacctggtggaagtgggaaccgccgttggtggaagaaataa
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