Pedobacter heparinus: Phep_3683
Help
Entry
Phep_3683 CDS
T00978
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
phe
Pedobacter heparinus
Pathway
phe03410
Base excision repair
phe03430
Mismatch repair
phe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Phep_3683
03430 Mismatch repair
Phep_3683
03440 Homologous recombination
Phep_3683
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phe03400
]
Phep_3683
DNA repair and recombination proteins [BR:
phe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Phep_3683
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Phep_3683
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Phep_3683
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
EAL
Motif
Other DBs
NCBI-ProteinID:
ACU05874
UniProt:
C6XU81
LinkDB
All DBs
Position
4395806..4397509
Genome browser
AA seq
567 aa
AA seq
DB search
MKKRWVQALQGNKETTALLAQQLNIDSSLAQILVQRGISSFEEARQYFRPDMGRLHDPFL
MKDMDKAIERIDKAINSREKILVYGDYDVDGTTSVALAFSFFSQFTDQIGYYIPDRHKEG
YGISTAGIDYANANGISLIIALDCGIKSTDKIAYANSLNIDFIICDHHLPGEVLPAAVAI
LDPKRKDCPYPFKELAGCGIGFKLAQAYCLQHRLPQEQYERYLDLVMVSIAADIVPIEDE
NRILAYHGLIKLNSNPCIGLKALMDISGKNKDYTLTDVVFTLAPRINAAGRMDHANQAVK
MLLCTEDNLAQEQSLLINLQNTERKTSDQNMTAEALALIAECEILINKKTTVVYHENWNK
GVIGIVASRLTEKYYRPTVVLTKSNGLLTGSARSVAGFDLYEALLGCEDLLVQFGGHKFA
AGLTIKAEDIGFFTERFENIVAATITEDLLCPEISIDNEIRLRQIDGKFQRIIAQMAPFG
PHNMAPVFVSHEVFLASKPYVVGTKHLKLAIKQQNSSIFECIAFGMAEEYEQLLQPNQPF
SVCYTIEENIWKAQKRLQLNIKEIKLN
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaagatgggtgcaggctttacagggcaataaagagacaacagcgctgcttgca
caacaattaaacatagacagcagtttggcccagatactggtacaaaggggtatttcctct
ttcgaagaggcaaggcaatatttcagaccggacatgggcaggttacacgatcctttttta
atgaaggacatggacaaagctattgaacgtattgataaggccattaacagtcgcgaaaag
atattggtttatggcgattatgatgtagacgggaccacatctgtagcccttgcctttagt
ttctttagccagtttacagatcagataggctattatattccggacagacataaagaaggt
tatggcatttctacagcagggattgattatgcaaatgcaaatggcatcagcttaattatt
gcgcttgactgtgggataaaatcaacagataaaatagcttatgccaatagtctgaatatc
gattttatcatctgtgaccatcatttacctggtgaggtattaccggctgcagtggccata
cttgatccaaaacggaaggattgcccctacccttttaaagagctggctggttgtggtatt
ggatttaaactggcacaggcttactgcctgcagcatcgcctacctcaggagcagtatgag
cgttacctggacctggtgatggtaagtattgcggccgacattgtcccgatagaagatgaa
aaccggatactggcttatcacggcctgattaagctgaacagcaatccctgtatagggctc
aaggcattgatggacatatcaggaaaaaacaaagattacacccttaccgacgtggtattt
acacttgccccacgtattaatgctgccggaaggatggatcatgccaaccaggcagtaaaa
atgttgctctgtacggaggataatctggcacaggaacagagtttactgatcaaccttcaa
aatacagaacgcaaaacttcggaccagaacatgactgccgaagccctggcattgatagct
gaatgtgaaatcctcatcaataaaaaaacaaccgttgtttaccatgaaaactggaataaa
ggggtaattggtattgtagcctcgaggctgacagaaaaatattatcgtcctacagtcgta
cttaccaaatcgaatggtctgttaaccggatctgcacgttctgtagcagggtttgacctc
tatgaggcactactgggctgcgaagatctactggtacaatttggcggacataaatttgca
gccggattaaccataaaagctgaagatatcggttttttcacagaacgtttcgaaaacata
gttgctgcaaccattacggaagacctgctttgtcccgaaatcagtatagacaacgagatc
cggttaaggcagatagatggaaaatttcagcgcattattgctcaaatggccccttttggc
ccacacaatatggcccctgtatttgtgagccatgaagtatttctagccagcaaaccttat
gttgtaggcacaaaacatttaaaattagctataaaacaacaaaattcatctatttttgaa
tgcatagcttttggaatggctgaagaatatgaacaactgttacaaccaaaccagcctttt
tctgtttgttatacaattgaagaaaatatatggaaagcgcaaaagcgtttacagttaaat
attaaagagattaaactgaattga
DBGET
integrated database retrieval system
