Pedobacter heparinus: Phep_3991
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Entry
Phep_3991 CDS
T00978
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
phe
Pedobacter heparinus
Pathway
phe02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
phe00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Phep_3991
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phe03021
]
Phep_3991
Transcription machinery [BR:
phe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Phep_3991
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
HTH_24
GerE
UPF0122
HTH_11
HTH_10
Glyco_hydro_43_rel
HTH_23
HTH_40
HTH_AsnC-type
HTH_29
DUF6362
HTH_Crp_2
PF0610-like_N
wHTH_Par
MarR_2
Motif
Other DBs
NCBI-ProteinID:
ACU06182
UniProt:
C6XVV7
LinkDB
All DBs
Position
complement(4818327..4818857)
Genome browser
AA seq
176 aa
AA seq
DB search
MDCQTDEQLTGLIREGNVFAFKALYNRYGNLLFVYISKSLHDQDDAQDIVQEVFAQLWNS
RESLNITTSVSSYLYASVRNKMIDLTRRNGLHKKYLEKLDTFEADNIMADHLVREKQLAA
LIEKEIDALPIKMREVFLLSRSSDLSHQEISDQLGLQKQTVRSHIKRALKILRLKF
NT seq
531 nt
NT seq
+upstream
nt +downstream
nt
atggattgtcaaacagacgaacagcttaccggccttataagggagggaaatgtttttgct
tttaaagcgctgtataacagatatggcaatttgttgtttgtctacatctcaaaaagcctg
cacgatcaggacgatgcgcaggatattgtgcaggaggtgtttgcccagctctggaattcg
agggaatccctgaacattaccacttccgtttcgtcctatttatatgcttcggtgcgcaat
aaaatgatcgatttaacaagacgcaatggtttacataaaaaataccttgagaaactggat
acttttgaagcagacaatatcatggcagatcacctggttagggagaaacaacttgcggcc
ttaattgaaaaggaaatcgatgcccttcctataaagatgcgggaagtattcctgttgagc
cgaagctcagatttatcgcatcaggagatttcagatcagcttggcctccaaaagcaaacc
gtcaggtcacatattaaacgtgccctgaaaattctacgcttaaaattttaa
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integrated database retrieval system
