Pedobacter heparinus: Phep_4214
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Entry
Phep_4214 CDS
T00978
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
phe
Pedobacter heparinus
Pathway
phe03030
DNA replication
phe03410
Base excision repair
phe03420
Nucleotide excision repair
phe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Phep_4214
03410 Base excision repair
Phep_4214
03420 Nucleotide excision repair
Phep_4214
03440 Homologous recombination
Phep_4214
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phe03032
]
Phep_4214
03400 DNA repair and recombination proteins [BR:
phe03400
]
Phep_4214
Enzymes [BR:
phe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Phep_4214
DNA replication proteins [BR:
phe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Phep_4214
DNA repair and recombination proteins [BR:
phe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Phep_4214
NER (nucleotide excision repair)
GGR (global genome repair) factors
Phep_4214
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_2
HHH_5
DUF3913
IMS
HHH
Motif
Other DBs
NCBI-ProteinID:
ACU06405
UniProt:
C6XX99
LinkDB
All DBs
Position
complement(5092527..5095346)
Genome browser
AA seq
939 aa
AA seq
DB search
MKKLFLLDGMALIYRAHFALSKNPRFTSTGINTSAVMGFANTLMEVLKKENPTHIAVVFD
TDAPTERHTDFEAYKAHREAMPEDLSAALPYIFKLIEGFRIPVITKDGFEADDIIGTLAK
EAEKKGFQVFCMTPDKDFAQLVSDNIFIYKPARMGNEMEIMGVKEVLAKWEIERVEQVID
ILGLWGDAVDNIPGIPGIGEKTAKALIKQYGSVENIIANSHELKGKQRENVETYAEQGLI
SKKLATIILNVPVEFDEKALELEEPSRELLEPLFAELEFRTIGKRVFGEGFNRGATMVVS
QQTDLFGNVVSETISYVETVVQTVPETTELEETKPLNTIENTSHNYQLANTPELRRELVD
LLLKQESISFDTETTGTDANLAELVGLSFSIKPGEGYYIPVPAEMEAAQQIVEEFRPVLE
NENIVKIGQNIKYDMLILKWYGISVKGRLFDTMLAHYLIDPDTRHNMDVLSENYLNYSPI
SITTLIGPKGKSQGTMRDVPVEKVVDYAAEDADITLQLANVFEPLLKQLNAEKLATEVEN
PLIYVLADIEKEGVRIDMDTLINYSKELELDIRKFEQSVYDKCGIKFNLASPKQLGEVLF
DKLQLDPKAKKTKTGQYQTGEDVLLALAHKSDIVQDILDFRQLQKLKSTYVDALPLLVNP
KTGRVHTSFNQAVAATGRLSSNNPNLQNIPIRTERGREVRKAFIPRDENHILLSADYSQI
ELRIIADISKEENMLDAFKNGIDIHTATAARVYGIAIEEVTPTQRRNAKAVNFGIIYGQS
AFGLSQNLGIPRKEAAEIIEQYFTQYPGIKRYMSDTMNFARENGFVETILGRRRYLRDIN
SANQTVRGFAERNAINAPIQGSAADMIKVAMINIHKDIQDQGLQSKMTMQVHDELVFDVL
KSEVEAMKKIIAHRMKTAIKTTVPIEVEIGEGENWLAAH
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaactttttcttcttgacggtatggcgctgatttacagggcgcattttgcactg
agtaaaaacccaagatttacttcaacaggtatcaatacttcggcagtaatgggctttgcc
aatactttgatggaagtgttaaaaaaagaaaaccccacacatatagctgtagtttttgat
acggatgccccaactgaaaggcataccgattttgaggcgtataaagcccatcgtgaggcc
atgccggaagacctttctgcagcgcttccctatatttttaaactgatcgaaggattcagg
atcccggtgatcacaaaagacggttttgaggcagatgatattattggaactttggccaaa
gaagcagaaaaaaaaggtttccaggtattttgcatgaccccggataaggattttgcacaa
ttggtatcggacaatatttttatttataagcccgcacgtatgggcaatgaaatggaaata
atgggggtgaaagaagtgctggccaaatgggaaattgaacgtgttgaacaagtcattgat
atcctcggactatggggtgatgcggtagataatattccgggcatacctggcataggagaa
aaaacggcaaaagcactcattaaacaatatggttcggtagaaaatatcattgccaattcg
catgaattaaaaggcaaacagcgtgagaatgtggaaacttatgctgaacagggcctgatc
tctaaaaaactggccaccattatactcaatgttccggtagaatttgatgagaaggccctt
gaattggaagagccaagccgggaattgctggaacctttatttgctgagctggaattcagg
accataggtaaaagggtatttggagagggctttaacagaggggcaacaatggtggtttcg
cagcaaaccgatctttttggaaatgtggttagtgaaaccatcagctatgtagaaacggtt
gtacaaactgtacccgagactacagagctggaggaaacaaagccactgaataccatagaa
aatacaagccacaattaccagcttgccaataccccggaactgcgcagggaactggttgat
ttgctgctgaagcaggaaagcatttcttttgacaccgaaacaacgggtacggatgcaaac
ctggcagaactggtagggctgtctttcagcattaagcccggtgagggttattatatccct
gtacctgccgaaatggaagctgcgcaacagattgtagaggaattcagaccggtactggag
aatgaaaatattgttaaaataggacagaacattaaatatgatatgctgatcctgaaatgg
tatggcatatcggtaaaggggcggttgtttgataccatgctggcccattacctgattgat
ccggatacccgtcacaacatggatgtgctgtcggagaattatttaaattattcgcccatc
tccatcaccacactgattggccctaaaggtaaatcgcagggtactatgcgtgatgtgcct
gttgaaaaggtagtggattatgcagcagaagatgcggatattaccttacagctggccaat
gtttttgagcccctgttgaagcagttaaatgctgaaaagctggctacagaagtagaaaac
cccttgatttatgtattggcagatattgaaaaggaaggggtgaggattgatatggatacc
ctgatcaattattcaaaagagctggagctggatatcaggaagtttgaacaaagtgtatat
gataaatgtggcatcaagtttaacctggcctcgccaaaacaattgggggaagtgcttttt
gataagttacagcttgaccctaaagcaaaaaagactaaaacagggcaataccagaccggt
gaagatgtgttgctggccctggcacataaaagtgatattgtccaggatattttagatttc
cgtcagctgcaaaagttaaaatctacttacgtagatgcactgccattgctggttaaccct
aaaacggggcgtgtacataccagttttaaccaggcggtagctgcaacaggaaggttgagc
tccaacaatccaaacctgcaaaatatcccgatccgtacagaacggggcagggaagtacgt
aaggcatttattcccagagatgaaaaccatattttgctttctgcggattattcgcagata
gagctgcggattatagccgacatcagcaaggaagaaaatatgctggatgcttttaagaat
ggaattgatattcatacggctactgcagccagggtttacgggattgctattgaggaggta
acacctacacagcgccggaatgccaaagcggtaaattttgggatcatttatggtcagtcg
gcttttggcttgtcgcaaaatctgggtattccacgtaaggaagctgcagaaatcatagaa
cagtattttacgcagtaccctggaattaaaaggtacatgtcggacaccatgaactttgcc
cgtgagaatggttttgtagaaaccattctgggcaggagaaggtatttgcgcgacatcaat
tctgccaaccagactgtacgtggttttgccgagcgaaacgcgataaatgccccgatccag
ggatcagctgcagatatgatcaaagtggcgatgatcaatatccacaaggacattcaggat
cagggcctgcaatctaaaatgacgatgcaggtgcatgatgagttggtgtttgatgtgctg
aaatcagaagttgaggccatgaagaagatcattgcccatcggatgaaaacagcgatcaaa
acgacagtacccattgaagtagagattggtgaaggcgaaaactggctcgctgcacattaa
DBGET
integrated database retrieval system
