Pseudomonas hefeiensis: PSH57_09115
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Entry
PSH57_09115 CDS
T09985
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
phef
Pseudomonas hefeiensis
Pathway
phef03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phef00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSH57_09115 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phef03400
]
PSH57_09115 (mfd)
Enzymes [BR:
phef01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSH57_09115 (mfd)
DNA repair and recombination proteins [BR:
phef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PSH57_09115 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WLH14451
LinkDB
All DBs
Position
complement(2080566..2084015)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGVLVVPITTALHRLAPT
QFLLGSSLVLDIGQKLDVEQMRSRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVQSVRLLPAKEFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGVGRERFPAKALPDL
AIEAKATQPLAALAGFLDEFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAG
KDRLAITIAPLNDGLVLEDPALALVAESPLFGQRVMQRRRREKRADAANDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDNQAAEFLTLQYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYETFSAGFP
FEETVDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
AIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRTTWLKLKAEQLGIKKV
DGGPNGGRIEFEAQTPVDPLVLIKLIQGQPKRYKFEGATMFKFMVPMERPEERFNTVEAL
FERLTPTPA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctcccgcttctccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggccatcgccgaggctgccagcgctgcaaagcgcttt
accctgctgctgaccgccgacagccaaagcgccgagcggctcgaacaggaactgagtttc
ttcgccccggatttgcccgtgctgcatttcccggactgggaaaccctgccctacgatctg
ttttcgccccaccaggacatcatttcccagcgaatcgccagcctttaccggttgccggag
ctcagtcatggcgttttggtagtgccaatcaccacggccctacatcgcctggcgccgacc
cagtttttgctgggcagcagcctggtgctggacatcggccagaagctcgacgtcgagcaa
atgcgcagccgtcttgaagccagtggctatcgttgcgtcgacacggtgtacgagcatggc
gagttcgcggtgcgcggtgcgttgatcgatctgttcccgatgggcagtaaattgccttac
cgcatcgacctgttcgatgacgaaatcgaaaccctgcgcaccttcgacccggaaaaccaa
cgctccatcgacaaagtacagtcggtgcgcctgctgccggccaaggaattcccgctgcaa
aaagacgccgtgacccgcttcaaggcgcgctttcgcgaacgtttcgatgtggatttccgt
cgctgcccgatctttcaggacctgagcagcgggatcactcccgccggtatcgagtactac
ctgccgctatttttcgaagaaacctccaccctgttcgattacctgccccaggacacccag
gtgttttccctgcccggcatcgaacaggcggcggaaaatttctggaacgatgtgcgcaat
cgctacgaagagcgccgcgtcgatccttcccgtcctttattgccaccggccgagctgttc
ctgccggtggaagactgctttgcccgactcaagagctggccacgcgtggtggcaagtcag
caggacgtggaaaccggcgtcggccgcgaacgcttcccggccaaggccttgccggacctg
gcgatcgaagccaaggccacacagccactggcggcgctggcgggcttcctcgacgagttc
ccggggcgcgtgctgttcaccgctgaatccgccggccgtcgtgaagtgctgctggaattg
ctcgaacgcctgaagctgagaccaaaaaccgtcgacagttggccggacttcgtcgcgggc
aaagatcgcctggcgattaccatcgcgccgctgaacgacggccttgtcctggaagacccg
gccttggcgctggtggccgaaagcccgttgttcggccagcgcgtcatgcagcgccgccgc
cgcgagaaacgcgccgacgccgccaacgacgccgtcatcaaaaacctcaccgaactgcgc
gaaggcgcgccggtggtgcatatcgaccacggcgtgggccgctacctgggcctggcgacc
ctggaaatcgacaaccaggctgccgagttcctcaccctgcaatacgccgagggcgccaag
ctctatgtgccggtggcgaacctgcacctgatcgcccgctacaccggcagcgacgacgcc
ctggcaccgctgcatcggctgggttcggaaacctggcagaaagccaagcgcaaggccgcc
gaacaagtgcgtgacgtggccgccgagttgctggacatctacgcccgtcgcgccgcccgc
gagggatatgccttcgccgacccgaaagccgactacgaaaccttcagcgccgggtttccc
ttcgaagaaaccgtcgaccagcagaccaccatcgaagccgtgcgcgccgacatgctcgcg
cccaaaccgatggaccggctggtgtgcggcgatgttggtttcggcaagaccgaagtggcc
atgcgcgccgcattcattgccgttcacggcggccggcaggtggcgatcctggtgcccacc
accctgcttgcccagcagcactacaacagtttccgcgaccgcttcgccgactggccggtc
accgtggaggtgatgagccgcttcaaatccaccaaggaagtgaatgcggccgtggccgat
ctggccgagggcaagatcgacatcgtcattggtacgcacaaactgctgcaggacgatgtg
aagatcaaaaacctggggctggtgatcatcgacgaagagcaccgctttggcgtgcgccag
aaagaacagctcaaggccctgcgcagcgaggtcgacattctgaccctgacagccacgccg
atcccgcgcacgctgaacatggcggtgtcgggcatgcgtgacctgtcgatcatcgccacg
ccgccggcccggcgcctgtcggtgcgcaccttcgtcatggagcagaacaaaagcacgatc
aaggaggccctgctacgcgagctgctgcgtggcggccaggtctactacctgcacaacgac
gtcaagaccatcgaaaaatgcgctgccgacctggccgaactggtgccggaagcccgcatc
gccatcggccacgggcagatgcgcgaacgtgaactcgaacaggtgatgagcgatttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcattgagaccggcatcgatgtgccg
agcgcgaacaccatcatcatcgagcgcgccgacaaattcggcctggcccagttgcaccag
ttgcgcggtcgggtcgggcgcagtcaccaccaggcctacgcctacctgttgacgccgccg
cgccagcagatcactccggacgcggaaaagcgcctggaagccatcgccaacacccaggac
ctgggcgccggtttcgtgctggccaccaacgatctggaaatccgtggtgcaggcgagttg
ctgggcgacggccagagtggccagatccaggccgtgggtttcaccctgtacatggaaatg
ctcgaacgggcggtcaagtcgatccgcaagggtgagcaaccgaacctcgaccaaccgttg
ggtggcgggccggagatcaatctgcgggtaccggcgctgatcccggaagactacctgccg
gatgtccacgcacggctgattctctacaaacgcatcgcctcggccaccgacgaagaaggc
ctcaaggacctgcaagtggagatgatcgaccgcttcggcctgctgccggagccaaccaag
aacctggtgcgtaccacctggctcaagctcaaggccgagcaactgggcatcaagaaagtc
gatggcggccccaatggcggtcgtatcgaattcgaagcccagacgccggtcgatccactg
gtcctgatcaagctgatccagggccagcccaaacgctacaagttcgaaggtgccacgatg
ttcaaattcatggtgcccatggaacgcccggaagagcgtttcaataccgtagaagcgctg
ttcgagcgcctcactccgacccctgcttga
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