Pseudomonas hefeiensis: PSH57_25950
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Entry
PSH57_25950 CDS
T09985
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
phef
Pseudomonas hefeiensis
Pathway
phef03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phef00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PSH57_25950 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phef03021
]
PSH57_25950 (rpoC)
03400 DNA repair and recombination proteins [BR:
phef03400
]
PSH57_25950 (rpoC)
Enzymes [BR:
phef01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PSH57_25950 (rpoC)
Transcription machinery [BR:
phef03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PSH57_25950 (rpoC)
DNA repair and recombination proteins [BR:
phef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PSH57_25950 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
DUF3150
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
WLH12224
LinkDB
All DBs
Position
complement(5732848..5737047)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRINETVNDRDGGSVTNTRIVDTTVGRALLFQVVPKGLSYDVVNLPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGNEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLVMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VDDNGKDLLLPGTDVIAQYFLPANALVGVADGARIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLATEDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtatcggattggcctcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacccgagcgtgacggcctgttctgcgccaag
atctttggcccggtaaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcac
cgtggtgtgatctgcgagaagtgcggcgttgaagtcgcgctggccaaagttcgtcgtgag
cgcatggcgcacatcgagctggcttcgccggttgcccacatctggttcctgaaatcgctg
ccgtcccgtatcggcttgctgatggacatgaccctgcgtgatatcgaacgcgttctctat
tttgagagctatgtcgttatcgacccgggcatgaccacccttgaaaaagggcagttgctc
aacgacgagcagtacttcgaagcgctggaagagtttggcgacgatttcgatgcccgcatg
ggtgccgaagctgtccgcgaactgctgcacgcgatcgacctggagcacgagattggccgt
ctgcgtgaagaaattccgcaaaccaactccgaaaccaagatcaagaagctgtccaagcgt
ctgaagttgatggaagccttccagggttccggcaacctgccagagtggatggtgctgacc
gttctgccggttctgccgccagacctgcgtccactggttccgctcgatggcggtcgtttt
gcgacttccgacctcaacgatctgtatcgtcgggtaatcaaccgtaacaaccgcttgaag
cgcctgcttgatctgtccgctccggacatcatcgtgcgcaacgaaaagcgtatgttgcag
gaagctgtcgatgcactgctcgacaacggtcgtcgtggtcgcgctattacgggttcgaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaaacagggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactccggtcgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggtctgcctaagaaaatggcactcgagctgttcaagccgttc
atcttcggcaaactggaaatgcgtggtctggcgaccaccatcaaggccgccaagaagatg
gtcgagcgcgagctgccagaggtttgggacgttctcgccgaagtgattcgcgaacaccca
gtgctgctcaaccgtgcaccgacgcttcaccgtctgggtatccaggcatttgaaccggta
ctgatcgaaggtaaggctatccagctgcacccgctggtctgtgctgcgtacaacgccgac
ttcgacggcgaccaaatggccgtgcacgtaccgctgacgctggaagcccagttggaagcg
cgtgcgttgatgatgtcgaccaacaacatcctgtcgccagccaacggtgagccaatcatt
gttccgtcgcaggacgttgtattgggtctgtactacatgacgcgtgaagcgatcaacgcc
aagggcgaaggtcgtgtgttcgcggatctgcaggaagttgaccgtgtgttccgtgctggc
gaagccgcactgcacgccaaggtcaaggtgcggatcaacgaaaccgtgaatgatcgtgac
ggtggcagcgtgaccaacacccgtatcgtcgacaccactgtcggccgtgccctgttgttc
caggttgtgccaaaaggcctgtcctacgacgtcgtcaacttgccgatgaagaaaaaggca
atctccaagctgatcaaccagtgctaccgcgtggttggtctgaaagagactgtgatcttc
gctgaccagttgatgtacaccggttttgcctattcgaccatttccggcgtttccatcggt
gttaacgacttcgttatcccggatgaaaaagcccgcatcatcggtgctgctaccgaagaa
gtgaaagagatcgaaagtcagtacgcctccggcctggttacccagggcgagaagtacaac
aaggtgatcgacctctggtccaaggcgaacgacgaagtatccaaggcgatgatggccaac
ctctcgaaagagaaagtcatcgaccgtcatggcaacgaagtcgaccaggaatccttcaac
tcgatgtacatgatggccgactcgggcgcacggggttctgctgcgcagatccgtcagctc
gccggtatgcgtggcctgatggccaagccggacggttccatcatcgagaccccgattact
gcgaacttccgtgaaggcttgagcgtactccagtacttcatctccactcacggtgctcgt
aagggtcttgccgataccgcgttgaaaacggcgaactccggttacctgactcgtcgtctg
gtagacgttgcccaggatctggtcgtgaccgagatcgattgcggcaccgagcatggcctg
gtgatgacgccgcacattgaaggcggtgacgttgtagagccgctgggtgagcgcgtattg
ggtcgtgttattgcccgtgacgtattcaagccaggtaccgaggacgtgatcgttcctgcc
ggcaccctggttgacgaaaagtgggtcgagttcatcgagctcaacagcatcgatgaagtg
atcgtgcgttcgccgatcagctgcgaaacccgctacggcatctgcgccaagtgctacggt
cgcgaccttgctcgtggtcaccaggtgaatatcggtgaagcggtcggcgttatcgctgcc
cagtccatcggtgagccgggtacccagctgacgatgcgtacgttccacatcggtggtgcg
gcaagccggacctccgcggccgacagcgtccaggtgaagaatggcggtactgttcgtctg
cacaacctcaagcacgtagagcgcgtcgacggtcacctggtggctgtatcgcgttccggt
gagttggcaatcgctgacgatttcggtcgtgagcgcgagcgttacaagctgccgtacggt
gctgtgatttcggttaaagaaggtgacaaggtcgatgctggcgccatcgtcgccaagtgg
gatccgcacacccacccgatcgtgaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgatcaagcgtcagaccgacgaattgaccggtatgaccaacattgaa
gtactggatgcgaaagatcgtccagctgctggcaaggacatccgtccggccgtgaagatg
gtcgacgacaacggcaaggatctgttgctgccaggcactgacgttatcgctcagtacttc
ctgccagccaacgccctggtcggtgtggcggacggtgcgcggatcgcgatcggtgatgtt
atcgcccgtatcccgcaggaaacttcgaaaacccgcgacatcaccggtggtctgccgcgt
gttgccgacttgttcgaagctcgtcgtccgaaagaggcttcgattctggctgaagtcagc
ggcaccattgcgttcggtaaagagaccaagggcaagcgccgtctggtcatcactccgaac
gacggtagcgatccgtacgaagagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggtccgagcgatccacacgacatc
ctgcgtctgttgggcgtaagtgcgctggccaagtacatcgtgaacgagattcaggacgtt
taccgtctgcaaggcgtgaagatcaacgacaagcacattgagaccatcctgcgtcagatg
ctgcgtaaagttgagatcgctgaatccggcgattcgagtttcatcaagggcgaccagatg
gaactgactcacgtactggtagaaaacgagcgtctggcgacggaagacaagttcgtctcc
aagttcactcgcgtgctgctgggtatcaccaaggcgtcgttgtccaccgaatcgttcatc
tcggcggcttccttccaggaaaccacccgtgtactgaccgaagcggcggtaaccggcaag
cgcgattacctgcgtggcctgaaagaaaacgtagtcgtgggtcgtctgatcccggctggt
accggtttggcctatcacagcgagcgcaagcgtcgtcgtgatgcagacaagccgttgcgc
gtaagcgccagtgaagtggaagctgcactgaccgaagcactgaactcgagcggtaactga
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integrated database retrieval system
