Providencia heimbachae: NCTC12003_00262
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Entry
NCTC12003_00262 CDS
T05509
Symbol
alkA
Name
(GenBank) DNA-3-methyladenine glycosylase
KO
K01247
DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
phei
Providencia heimbachae
Pathway
phei03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
phei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NCTC12003_00262 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phei03400
]
NCTC12003_00262 (alkA)
Enzymes [BR:
phei01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
NCTC12003_00262 (alkA)
DNA repair and recombination proteins [BR:
phei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
NCTC12003_00262 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
AlkA_N
Motif
Other DBs
NCBI-ProteinID:
SQH11600
LinkDB
All DBs
Position
1:complement(298705..299592)
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AA seq
295 aa
AA seq
DB search
MSTILLPEHYRSDDFFAFHLRDQQNIAEIVDENCLRKGIIWQGNAAQIHLHIENQKAVIS
LDIDSSNFSVSEKQASSLGQHMLGLNQDVAKFEQQYSADPILEKLINNQKELRIYQSASP
FEALVWAIIGQQISVHAAIAIRRRFIQAVGIQHSSGIWCFPTEQQVMLVDDDILRQTGFS
TGKIIALRALCDAIQNQHLDLSQQVSPENVAVITEQLLSIKGIGPWTVSYALLRGFNYLD
GSLHGDVAVRRNLQKLLQQETQPTAKETEKWLEQFSPWRALVAAHLWRSQSAAGY
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacaattttactgccagaacactatcgttccgatgatttttttgcctttcattta
agggatcaacaaaatattgccgaaattgttgatgaaaattgtttacgtaaaggaattatt
tggcaaggtaatgcggcacaaattcatcttcacattgaaaatcaaaaagcggtgatttca
ctcgatattgattcatcaaacttcagtgtgagtgaaaagcaagcatcatcattaggccaa
catatgcttggactaaatcaagacgtcgcaaaatttgaacaacaatactcagcagacccg
attcttgaaaaattaattaacaaccaaaaagaattgagaatttatcaatctgccagtcca
tttgaagctttggtttgggcaattattggccaacaaattagtgtccatgccgccattgcg
attcgtcgtcgctttattcaagccgtaggtattcaacattcttcgggtatttggtgtttc
cctaccgagcaacaagtcatgttagtcgatgacgatattttacgccaaacgggcttctca
acaggtaaaatcattgcattgagagcattgtgtgatgctattcaaaaccagcacctcgat
ttatcacagcaagtttcgccggaaaatgttgccgtgatcactgagcaacttttgagtatt
aaagggatcggtccttggaccgtaagttatgcgctgcttcgtggatttaactacctagat
ggttctttgcatggggatgttgcggtgcgacgtaatttacaaaagttactccaacaagag
acgcagccgaccgctaaagaaacggaaaaatggttagaacaattttcaccttggcgtgct
cttgttgctgctcatttatggcgtagccaatctgcagcagggtattaa
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