Providencia heimbachae: NCTC12003_00354
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Entry
NCTC12003_00354 CDS
T05509
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
phei
Providencia heimbachae
Pathway
phei03030
DNA replication
phei03410
Base excision repair
phei03420
Nucleotide excision repair
phei03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC12003_00354 (polA)
03410 Base excision repair
NCTC12003_00354 (polA)
03420 Nucleotide excision repair
NCTC12003_00354 (polA)
03440 Homologous recombination
NCTC12003_00354 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phei03032
]
NCTC12003_00354 (polA)
03400 DNA repair and recombination proteins [BR:
phei03400
]
NCTC12003_00354 (polA)
Enzymes [BR:
phei01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NCTC12003_00354 (polA)
DNA replication proteins [BR:
phei03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC12003_00354 (polA)
DNA repair and recombination proteins [BR:
phei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
NCTC12003_00354 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC12003_00354 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Prok-E2_E
DUF2529
HHH
Motif
Other DBs
NCBI-ProteinID:
SQH11691
LinkDB
All DBs
Position
1:400477..403275
Genome browser
AA seq
932 aa
AA seq
DB search
MAQIAENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLVMQYKPSHVAV
VFDAKGKTFRDELFESYKSHRPPMPDDLREQIAPLHEMVEAMGLPLLVVPGVEADDVIGT
LAREASQKGMSVLISTGDKDMAQLVEPNVTLINTMTNTILGPDEVKDKYGVPPELIIDFL
ALMGDSSDNIPGVPGVGEKTALALLQGIGSLESIYNDLDAIAPLGFRGSKTLAPKMAENR
ELAFLSYQLATIKTDVELEKCCEELQVAQPDPDKLHQLFSRYEFKRWLVDVENGSWMEAK
AGKAPTNRATATKPVAAATPVAPAPTLSAENYQTILEKADLVHWIEKLTSAPLFAFDTET
DSLDTQEARLVGMSFAIEAGHAAYLPLGHDYLDAPVQLPLDEVIALMKPILENEKILKVG
QNLKYDAEVLENYGIELKGIAFDTMLESYVLNSVAGMGRHDMDSLADRHLNHKTVSFEEI
AGKGKKQLTFNQIALEEAANYAAEDADVTLLLHQALYPQLEAEPKLAHIFHNIEIPLVPV
LVRMERKGVLIDASVLAAQSKIITARLAELEKEAFELAGEEFNLASPKQLQVILFEKLQL
PIIKKTPSGAASTNEEVLEELALNHALPKLLLEHRSLAKLKSTYTDKLPLMISPRTQRVH
TSYHQAVTATGRLSSRDPNLQNIPVRTEEGRRIRQAFIARKGYKVMAADYSQIELRIMAH
LSQDKGLLTAFAEGKDIHKATAAEVFGVALEDVTNDQRRSAKAINFGLIYGMSAFGLARQ
LGIPRGEAQRYMDLYFERYPGVLRYMENTRLQASEQGYVETLEGRRLYLADINASNGMRR
KAAEREAINAPMQGTAADIIKKAMIAVDEWLQTEKPNADMLMQVHDELVFEVKESELEHV
QEKVQALMEQSMTLDVPLKVDVGVGDNWDEAH
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggctcagattgcagaaaatccccttattttggtcgatggttcctcttacctgtaccgt
gcatatcatgcatttcctccactgaccaatagcgcaggggagcctactggagccatgtat
ggtgtacttaacatgctacggagtttggttatgcagtataagccaagtcatgtggccgtt
gtctttgatgccaaagggaaaacatttcgtgatgaactgttcgaaagttataaatcacac
cgccctccgatgcctgacgacttgcgtgaacaaatagcgcctctgcatgaaatggtggaa
gcgatgggcttgccattattggttgttccaggggtagaggcagacgacgttattggtact
ttagcacgcgaagctagccaaaaagggatgtctgttctgatcagcaccggcgataaagat
atggctcagctggtggagccgaatgtcacgctaatcaataccatgactaacaccatttta
ggacccgatgaggtcaaagataaatatggtgtgccacctgaactgattattgatttcctt
gcattaatgggcgattcatctgacaacattcccggagtccctggggtcggtgagaaaact
gcacttgcgttactgcaaggaattggcagtttagaatctatttataatgatcttgatgcc
attgcaccattaggttttcgaggatcgaagacattagcgcctaaaatggctgaaaatcgt
gaattagcgtttttatcctaccaactagcgacgataaaaacagatgtagaactcgaaaag
tgctgtgaagaattacaggtagcacagcctgatccagacaaacttcatcaactgtttagt
cgctatgaattcaaacggtggttagtcgacgttgaaaatggtagctggatggaagccaag
gcaggtaaagcccccacaaatcgtgcgacagcgactaagcccgttgcggcagctacacct
gtagcacctgcacctacattgagtgcggaaaactatcaaacaattctagaaaaagcagat
ttagtgcattggatagaaaaattaacttcagcgccattgtttgcttttgatacagaaaca
gacagtttagatacacaggaagctcgccttgtcgggatgtcttttgctatcgaagcgggt
catgctgcttacctaccactcggccatgattatcttgatgcgcctgtgcaattgcccctc
gatgaagtgattgcattgatgaaacctattcttgagaatgaaaaaatccttaaagtaggc
caaaacttaaaatatgatgctgaagtacttgaaaattatggtattgaactgaaaggtatt
gcctttgataccatgttggaatcgtatgtgctcaatagcgttgcgggcatggggcgccat
gatatggacagccttgcagaccgccatctcaaccataaaacagtcagttttgaagaaatt
gcaggcaaaggtaaaaagcagctaacgtttaatcaaatcgcattagaagaagcggcaaat
tatgccgcggaagatgcggatgttacgttacttttgcatcaagcactttatcctcaatta
gaagcagaaccaaagcttgcgcatatatttcataatattgaaataccgctagtacccgta
ttggtcagaatggaacgtaaaggggtgcttattgatgcctctgttttagcggcacaatca
aagatcattactgcacgtttagctgaacttgaaaaagaagcgtttgagctggcaggagaa
gaatttaaccttgcttcgccaaaacagttgcaggtcattttatttgagaaactgcaatta
cctattattaagaaaacgccaagtggtgcggcttcaaccaatgaagaagtgttggaagaa
ctcgcgcttaatcatgcgctaccgaaattattacttgaacatcgcagcctagcaaaactg
aaatcgacttatacggataagttacccttaatgataagcccaagaacacagcgtgttcat
acttcttatcatcaagcggtaacggcgacagggcgtttatcatctcgtgatcctaactta
caaaatatcccagtaagaaccgaagaagggcgtcgaattcgccaggcatttattgctcgt
aagggttataaagtgatggcggcggactactcgcaaatcgaattacgcattatggcgcat
ttatcacaagataaaggccttttaaccgcttttgctgaaggcaaagatattcataaagcg
actgcggcagaggtatttggtgttgcgcttgaggatgttaccaacgatcaacgtcgtagt
gcgaaagcgattaactttggtttgatatatggtatgagcgcttttggtcttgcgcgtcag
ttaggcattcctcgaggtgaagcacaacgttatatggatctctactttgagcgctatccc
ggtgtattgcgttatatggaaaacacccgtttacaagcatcagagcaaggctatgttgaa
accttagaaggccgtcgactctacttagcagatattaatgcgagtaatgggatgcgccga
aaagccgctgaacgtgaagcgattaatgcgccaatgcaaggcacagccgcagatattatc
aagaaagccatgattgcggttgacgaatggttgcaaacggaaaaacctaatgcagatatg
ctcatgcaagtgcacgatgaattggtgtttgaggttaaagaatctgagcttgagcatgtg
caggaaaaagtacaagcattgatggagcaaagcatgactctcgatgtgccattgaaggtg
gatgttggggtgggtgataattgggatgaagcccactag
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