Providencia heimbachae: NCTC12003_00394
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Entry
NCTC12003_00394 CDS
T05509
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
phei
Providencia heimbachae
Pathway
phei03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phei00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC12003_00394 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phei03021
]
NCTC12003_00394 (rpoB)
03400 DNA repair and recombination proteins [BR:
phei03400
]
NCTC12003_00394 (rpoB)
Enzymes [BR:
phei01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC12003_00394 (rpoB)
Transcription machinery [BR:
phei03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC12003_00394 (rpoB)
DNA repair and recombination proteins [BR:
phei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC12003_00394 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
SQH11729
LinkDB
All DBs
Position
1:438057..442085
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPNGQNGLEAAFRSVFPIQ
SYSGNAELQYVSYRLGEPVFDVKECQIRGITYSAPLRVKLRLIVYEREAPEGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRAMNYSTEEILNIFFDKTVFQIRDNKLMMT
LVPERLRGETASFDIEANGKVYIEKGRRITARHIRLLEKEEVSSIEVPVEYIAGKVVAKD
YIDESTGELICAANMELSLDMLARLSQSGHKTIETLFTNDLDHGAYMSETVRVDPTNDRL
GALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLNREEIEGSGIL
SKEDIIEVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDALMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRLVRDGLVT
DEIHYLSAIEEGNFIIAQANTVLGEDGSFVEELITCRNRGESSLFSREQVEYMDVSTQQI
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVARR
GGSVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCISQMPCVSLNEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELSCVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEETQLRDAKKDL
TEELRIFEAGLFARIRNVLINGGIEAEKLDKLPRDRWLELSLPDEEKQNQLEQLAEQYDE
LKSDFEKKLDAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PVEDMPYDENGNPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKQQEEVAK
LREFIQKAYDLGDDPRQKVDLNTFSDEEVLRLAENLKKGMPIATPVFDGAKEKEIKELLT
LAGLPTSGQISLFDGRTGEKFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGSHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttttggatataccttatctcctttctatccaacttgactcgttccagaagtttatcgag
caagatccaaacggccagaatgggctagaagctgctttccgttctgtgtttccgattcag
agctatagtggtaacgctgaactgcaatatgtcagctatcgtttaggcgagcctgttttt
gatgttaaagaatgtcaaattcgcggtatcacttattctgcaccactgcgtgtgaagctg
cgtctcattgtttatgagcgtgaagcaccagaaggcaccgttaaagacatcaaagaacaa
gaagtctacatgggtgagataccactcatgactgaaaacggaactttcgttatcaatggt
actgagcgtgttatcgtttctcagctgcaccgtagtccaggtgtattctttgacagcgac
aaaggtaagacacactcatcagggaaagtgttatataacgcacgtattatcccttaccgc
ggttcatggcttgatttcgaatttgacccgaaagataacttatttgtacgtattgaccgt
cgccgcaaattaccagcgaccattattctgcgtgcaatgaattacagcaccgaagaaatt
ctgaatattttcttcgacaaaactgtattccaaattcgtgataataaattgatgatgacg
ctagttcctgagcgtctacgtggtgaaactgcttcatttgatatcgaagcaaacggcaaa
gtttatattgaaaaaggccgtcgtatcactgctcgtcatatccgcttactcgagaaagaa
gaagtcagcagcattgaagttcctgttgaatacatcgcgggtaaagtggtagcaaaagat
tacattgatgaaagcactggtgagctgatttgtgcagcaaacatggaactttcattggat
atgctggcacgtctgagccaatcaggtcataaaacaatcgaaacattgtttactaatgac
ttggatcacggtgcgtacatgtccgaaactgtccgtgtcgatccaactaacgaccgttta
ggtgcgctggttgaaatctaccgcatgatgcgtcctggtgagccaccaacacgtgaagca
gctgaaaatctattcgaaaacttgttcttctctgaagaccgttacgatctttctgctgtt
ggccgtatgaagttcaaccgttcactaaaccgtgaagaaatcgaaggttcaggtatcctg
agcaaagaagatatcattgaggtaatgaaaaaactcattgaaatccgtaacggtcgtggt
gaagtggatgatatcgaccacttaggtaaccgtcgtattcgttccgttggtgaaatggca
gaaaaccagttccgtgtaggtctggttcgtgttgagcgtgcagtgaaagagcgtctttct
ctgggcgaccttgatgcattgatgccacaggatatgatcaacgctaagccaatttcagcg
gcagttaaagagttctttggttccagccagctttcacaatttatggaccagaacaaccca
ctgtcagaaattacgcacaaacgtcgtatctctgcgttaggcccaggtggtttgactcgt
gagcgtgcgggctttgaagtacgtgacgttcacccaactcactacggtcgtgtttgtcca
atcgaaactcctgaaggcccgaatatcggtctaatcaactcattgtctgtttatgcacag
accaacgagtatggtttcttggaaacaccttatcgtttagttcgtgacggtctcgtgact
gatgaaatccactatctgtctgcaattgaagaaggtaacttcatcattgctcaggccaac
accgtattaggtgaagatggtagctttgtcgaagaactgattacctgtcgtaaccgaggt
gaatcaagtttattcagccgtgaacaggttgaatatatggacgtttcaacacaacagatc
gtttctgttggtgcgtctttgattccattccttgaacacgatgatgctaaccgtgcattg
atgggtgcgaacatgcaacgtcaagcggttccaactttacgtgctgacaaaccattagtc
ggtacaggtatggaacgtgcggttgctgttgactcaggtgttaccgctgttgcaagacgt
ggtggctctgttcagtacgttgatgcttctcgtatcgtcattaaagttaatgaagatgag
atgtatccgggcgaagctggaatcgatatttataacctgactaaatatacacgttctaac
cagaacacctgtatcagtcaaatgccatgtgtgtccctaaatgagcctgtagaacgcggt
gacgtgttagcggatggtccttcaacagacctcggtgaattggcacttggtcaaaacatg
cgcgtggcatttatgccatggaatggttataacttcgaagactccatcttagtttctgag
cgtgttgttcaagaagaccgttttactaccattcatattcaggaactttcttgtgtgtct
cgtgacactaaattagggcctgaagaaatcacggctgatattccaaacgttggtgaagct
gcactttctaagctcgatgaatccggtatcgtatacattggtgcggaagtgaaaggtggc
gatattctggttggtaaagtaacccctaaaggtgaaactcaattaaccccagaagagaaa
ctgctgcgtgctatcttcggcgaaaaagcgtctgacgttaaagattcttctttacgcgtt
ccaaacggtgtatccggtacgattattgatgtacaggtcttcacccgtgatggcgtagaa
aaagataaacgtgcgctagaaatcgaagaaactcagttacgtgatgcgaagaaagactta
acagaagagctacgtattttcgaagctggcctgtttgcacgtattcgtaatgttctgatt
aatggcggaattgaagctgaaaaactggacaaactgcctcgcgatcgttggttagagcta
tctctacctgatgaagagaagcaaaaccagttagaacagttagctgaacagtatgacgag
ttaaaatctgattttgagaaaaaattagatgcgaaacgtcgtaagatcacgcaaggcgat
gatctggctccaggcgtactgaaaattgttaaggtttatttggctgttaaacgtcaaatc
caaccgggtgataaaatggcgggtcgccatggtaacaaaggtgttatctcaaaaatcaac
ccagttgaagacatgccttacgatgaaaacggtaacccagttgacatcgttctgaacccg
ctgggcgtaccatcacgtatgaacatcggtcagattttggaaactcacttaggtatggct
gctaaaggtattggtgaaaaaatcaatgcgatgcttaaacagcaagaagaagttgccaaa
ctgcgtgaatttatccaaaaagcctatgatcttggtgatgaccctcgccagaaagttgac
ttgaacactttctctgatgaagaagttctgcgtttggctgagaacctgaaaaaaggtatg
ccaattgcaacgccagtatttgatggtgctaaagagaaagaaattaaagagttactgaca
ctggcaggtttaccaacctcgggtcagatttctctgttcgatggtcgcactggtgagaag
tttgagcgtcaggttacagtcggctatatgtacatgctgaaactgaaccacttagttgac
gataagatgcacgcccgttcaactggttcttacagcttggttactcagcagccgctgggt
ggtaaagcgcagttcggtggacagcgtttcggggagatggaagtgtgggcactagaagca
tacggtgctgcctatacgcttcaagaaatgttgactgttaagtcggatgacgttaacggc
cgtactaagatgtataaaaacatcgttgatggtagccatcagatggaacctggcatgccg
gaatctttcaacgtattgctgaaagagatccgctcactgggtatcaacatcgaactggaa
gacgagtaa
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