Providencia heimbachae: NCTC12003_00395
Help
Entry
NCTC12003_00395 CDS
T05509
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
phei
Providencia heimbachae
Pathway
phei03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phei00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC12003_00395 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phei03021
]
NCTC12003_00395 (rpoC)
03400 DNA repair and recombination proteins [BR:
phei03400
]
NCTC12003_00395 (rpoC)
Enzymes [BR:
phei01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC12003_00395 (rpoC)
Transcription machinery [BR:
phei03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC12003_00395 (rpoC)
DNA repair and recombination proteins [BR:
phei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC12003_00395 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
SQH11730
LinkDB
All DBs
Position
1:442201..446415
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLIKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTSLERAQILTEEQYLDALEEFGDEFDAKM
GAEAIQGLLKNLDLANECETLREELNETNSETKRKKLTKRIKLLEAFIQSGNKPEWMILN
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLSGPKEAERVYRSG
HASLHARVKVRINEEVKDSEGNITINTGLVDTTVGRAILWMIVPKGLPYELVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKAGIIAEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTESVINRDGIEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGILMTPVIEGGDVKEPLRERVL
GRVTAEDILNPGTADILVPRNTLLHEKLCDLLETNSVDSVKVRSVVSCETDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVRNTGTLKL
FNAKYVKNTEGKLVITSRNTELRLIDEFGRTKESYKVPYGAHLTKGDGAAVNGGETVANW
DPHTMPVVSEVSGIIRFSDMLDGQSMTRQTDELTGLSSIVVLDSAERTSAGKDLRPALRV
IDANGKDVLIPNTDMPTQYFLPGKAIVQLDDGIAINAGDTLARIPQESVGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPLDGSEPYEEMIPKWRQLNVFE
GEIVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKVTIADAGSSDFLEGEQIEYSRVKVANRKLELDGKITANYARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGFAYHQERIRRRHLNDVVE
APQVSADEATANLAELLNAGFSSK
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttaataaagtttctgaaagcgcaaaccaagaccgaagagtttgatgcgatc
aaaattgctctggcatcacctgatatgatccgttcatggtcattcggtgaagttaaaaag
ccagaaaccattaactaccgtacgttcaaacctgagcgtgacggccttttctgtgcgcgt
atttttgggccagtaaaagactacgaatgtctgtgcggtaagtacaaacgtttaaaacac
cgtggtgtgatttgtgagaagtgtggcgttgaagttacacagaccaaagttcgtcgtgaa
cgcatgggtcatattgaactggcatcaccgacagcacatatttggttcttaaaatcactg
ccatcccgtatcggtttgctgcttgatatgccattgcgtgatatcgaacgcgttctgtac
tttgaatcttatgttgttgttgaaggtggtatgactagccttgaacgcgcacagattttg
acagaagagcaatacttagatgcgctggaagagttcggtgacgaatttgacgcgaaaatg
ggtgcggaagccatccaaggactgctgaaaaacctcgatcttgcgaacgagtgtgaaacg
ctacgtgaagagttaaacgaaactaactctgaaaccaagcgtaagaagctgactaagcgt
attaagctactggaagcatttattcagtctggtaacaaaccagagtggatgattttaaat
gttctgccagtactgccacctgatttacgtccattagtaccgctcgatggtggtcgtttc
gctacatcagatctaaacgatctgtatcgtcgcgttatcaaccgtaataaccgtctgaaa
cgtcttctggatttggctgcgccagatatcatcgtacgtaacgaaaaacgtatgctgcaa
gaagcggttgatgccctgctagataacggtcgtcgtggtcgtgctattacaggttctaac
aaacgtcctctgaaatctttggccgatatgatcaaaggtaaacaaggtcgtttccgtcag
aacttacttggtaagcgtgttgactactcaggccgttcggttattaccgtgggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcacttgagttattcaaaccattt
atctatggcaaattagagctacgcggtctggcaacaaccattaaagctgcgaagaaaatg
gttgagcgcgaagaagctgtagtttgggatatcttggatgaagttatccgtgaacaccca
gttatgctgaaccgtgcaccaacacttcaccgtctgggtattcaagctttcgaacctatt
ttgatcgaaggtaaagctatccaattgcacccattggtttgtgcggcatacaacgccgac
ttcgatggtgaccaaatggcggtacacgttcctctgactctggaagctcagttagaagca
cgtgcgttgatgatgtcaacaaacaacattctgtcaccagcaagtggtgagcctatcatc
gttccttcacaggacgttgtattgggtctttactacatgactcgtgattgtgtaaatgcg
aaaggcgagggcatggttttatctggccctaaagaagctgagcgtgtttaccgttcaggt
catgcttcattgcatgcccgagtaaaagttcgtattaatgaagaagttaaagacagtgaa
ggtaatattacgatcaatactggtttagttgataccactgttggccgtgcaattttatgg
atgatcgtaccgaaaggtctaccttacgaattggttaaccaagcgttaggtaagaaagct
atctctaaaatgctgaatacttgttaccgtatactgggcctgaaaccaacggttattttt
gctgaccaaatcatgtacactggttttgcctatgcggcacgttctggtgcatctgttggt
atcgacgatatggttattcctgagaaaaaagcagggatcatcgccgaagcagaagctgaa
gttgctgaaattcaggaacagttccagtcaggtcttgtgaccgctggcgaacgttataac
aaagttatcgatatttgggctgcggcaaacgaacgtgttgctaaagcaatgatggaaaac
ttgtcgactgaaagcgttatcaaccgtgatggcatagaagaacaacaagtttcgttcaac
agtatctatatgatggccgattccggtgctcgtggttctgctgcgcagatccgtcagctt
gctggtatgcgtggtttgatggctaagccagatggttcaatcatcgaaacaccaatcacg
gcgaacttccgtgaaggtctaaacgttcttcagtactttatctctacgcatggtgcgcgt
aaaggtcttgcggataccgcattgaaaacagcaaactccggttatctgactcgtcgttta
gttgacgttgcacaggacttggttgttactgaagacgactgtggaactcacgaaggtatc
ctgatgactccggttatcgagggtggcgacgttaaagaaccactgcgtgaacgtgtactt
ggtcgtgtgactgcagaagatatcctgaacccaggcactgcggacattcttgtaccacgt
aatactttacttcacgaaaaactgtgtgacctgttagaaactaactcagttgacagcgtt
aaagtacgttctgttgtaagttgtgaaactgactttggtgtgtgtgctcactgttatggt
cgtgaccttgctcgtggtcatatcatcaacaaaggtgaagctatcggggttatcgcggca
caatcaatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcagaatctagcatccaagtacgtaacacaggtacgctgaaactg
tttaacgcgaaatacgttaaaaatacagaaggcaaactggttattacttctcgtaataca
gaattacgtctgattgacgaattcggtcgtacgaaagaaagctataaagtaccttacggt
gcgcacctaactaaaggtgatggcgcggcagttaatggcggcgaaaccgttgctaactgg
gatccgcatacaatgccagttgtcagtgaagtatcgggtattatccgcttctccgacatg
cttgatggccagtcaatgactcgccagactgatgaattaaccggtctgtcgtcaatcgtt
gttttggactcagctgaacgtacaagtgcgggtaaagacttacgtcctgcattgcgcgtt
attgatgcaaatggtaaagatgttctgatccctaacacagacatgcctactcagtatttc
ttaccgggtaaagcaattgttcagttagatgatggcattgctatcaatgcgggtgatacg
ttagcgcgtattccacaggaatctgttggtacgaaagatatcacgggtggtctgccacgc
gtagctgacttgtttgaagctcgtcgtccgaaagagccggcaattctggcagaaatcagc
ggcattatttcgtttggtaaagaaaccaaaggtaagcgtcgtttggttatcacgccatta
gatggttctgaaccatacgaagagatgatccctaaatggcgtcagcttaacgtgttcgaa
ggtgaaatcgttgaacgtggtgatgttgtctctgatggtccagaatctccgcatgatatt
ctgcgtttgcgtggtgtccatgctgtaacgcgttatatcactaacgaagttcaggaagtt
taccgcttacaaggcgttaagataaacgataaacacattgaagttatcgtgcgtcagatg
ctgcgtaaagtcactatcgcggatgcaggaagttctgacttcctcgaaggtgagcagatt
gaatattcacgtgtgaaagttgcgaaccgtaaactggaacttgatggcaagatcacagcg
aattacgctcgtgacctgttgggtatcactaaagcatctctggcaacagaatcctttatc
tcagcagcatcgttccaagaaacaactcgcgtactgacagaagctgcagtagcaggtaaa
cgtgatgaactgcgcggtctgaaagagaacgttattgttggacgtctgatccctgcgggt
actggttttgcgtatcatcaggaacgtatccgtcgtcgtcatctgaatgatgtagtggaa
gcgccacaagtcagcgcagatgaagcaacagcgaacttggctgaactgttaaatgcaggc
ttttctagcaagtag
DBGET
integrated database retrieval system
