Providencia heimbachae: NCTC12003_01396
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Entry
NCTC12003_01396 CDS
T05509
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
phei
Providencia heimbachae
Brite
KEGG Orthology (KO) [BR:
phei00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
phei03009
]
NCTC12003_01396 (srmB)
Enzymes [BR:
phei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC12003_01396 (srmB)
Ribosome biogenesis [BR:
phei03009
]
Prokaryotic type
rRNA helicases
NCTC12003_01396 (srmB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_11
AAA_30
Cas3-like_C_2
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
SQH12699
LinkDB
All DBs
Position
1:complement(1590769..1592109)
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AA seq
446 aa
AA seq
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MTASTFSELELDESLLQALAKKDYQRPTAIQAAAIPAAMDGRDVLGSAPTGTGKTAAFLL
PAIQHLLDFPRKKSGPPRVLVVTPTRELAMQVADQAREFCEHNQLDIATITGGVAYMNHA
EVFSENQDICVATTGRLLQYIKEENFDCRAVEILILDEADRMLDMGFANDIETIAGETRW
RKQTMLFSATLEGEAIRDFAERLLENPIEIDSDPSRRERKKIQQFHYRADSLEHKTALLC
HLLKQEEVTKSIVFVRKRERLREVVQWLRTAGIEPCYLEGEMVQAKRTEAIRRLTSGQVK
VLVATDIASRGLDIDNISHVFNFDLPRTADVYLHRIGRTGRAGRKGIAISLIEAHDYPLF
GKITRYIEDPIKVRVIDSLRPSTKAPSDAMLNKPKPSKKVLAKRKEKQKEEQTKKKEKIR
HRDKKNIGKRRTPVTPAASTTSDKTE
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgactgcatccacattttctgaacttgaactagacgaaagcctgctccaagcgctggcc
aaaaaagactaccagcgcccgactgctattcaggcagccgccatcccagcagcaatggat
ggacgtgatgttctaggttcagccccaacaggaacaggtaaaactgcggcattcttattg
ccagcaattcagcatttacttgatttcccaagaaaaaaatcaggaccacctcgtgttctg
gttgtaacaccaactcgagaacttgctatgcaagttgctgatcaagcaagagagttttgt
gagcataatcaattagatattgccactattacgggtggtgttgcttatatgaaccatgct
gaagtctttagtgaaaaccaagacatctgcgtagcgacaacaggtcgtttgctacaatac
attaaagaagaaaactttgactgtcgagcggttgaaattttgatcttagatgaagctgac
cgcatgttagacatgggttttgcaaatgatatcgaaacgattgcaggtgaaacccgctgg
cgcaaacaaaccatgctgttttctgccacccttgaaggggaagctattcgtgattttgct
gaacgcctgttagaaaaccctatcgaaattgattctgacccttctcgtcgcgaacgtaaa
aagatccaacaatttcattaccgtgctgactcccttgagcataaaaccgcgttgttatgt
catcttctaaaacaagaagaagtcactaagtccattgtatttgttcgcaagcgtgaacgc
ttacgtgaagtcgtacagtggttgcgtactgcaggcattgagccgtgttaccttgaaggt
gaaatggtccaagctaaacgtactgaagcgatacgccgattaacgagtggacaagtaaaa
gtattggtggccactgatatcgcatctcgaggcctagatattgataatatcagccacgta
tttaactttgatttaccacgcactgccgatgtttatttacaccgtattggccgtacgggt
cgcgcaggccgtaaaggaattgctatttctttaattgaagcacatgactacccattattt
ggtaaaatcacgcgttatattgaagacccgatcaaagtacgcgttattgactctttacgc
ccatcaactaaagcaccttcagacgctatgttgaataaaccaaaaccgtcaaagaaagtg
cttgcaaaacgtaaagaaaaacaaaaagaagagcagactaaaaagaaagaaaaaatacgt
catcgcgataagaaaaatattggtaaacgccgtaccccagttaccccagcagcgtctaca
acaagcgataaaacagagtaa
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