Providencia heimbachae: NCTC12003_01647
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Entry
NCTC12003_01647 CDS
T05509
Symbol
sbcB
Name
(GenBank) Exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
phei
Providencia heimbachae
Pathway
phei03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
NCTC12003_01647 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phei03400
]
NCTC12003_01647 (sbcB)
Enzymes [BR:
phei01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
NCTC12003_01647 (sbcB)
DNA repair and recombination proteins [BR:
phei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
NCTC12003_01647 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NCTC12003_01647 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NCTC12003_01647 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
SQH12933
LinkDB
All DBs
Position
1:complement(1877572..1878999)
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AA seq
475 aa
AA seq
DB search
MQDNKKQPSFFIHDYETFGKRPALDRPAQFAGVRTDLDFNIIDEPEVFYCAPSDDYLPQP
EAVMITGITPQIALAQGVNEAEFAKRIHKAFTVPNTCIMGYNNIRFDDEVTRNIFYRNFY
DPYAYSWQQGNSRWDLLDALRACFALRPEGITWPENDDGLPSMRLEHLTKANGVAHENAH
DAMSDVLATINMAKLLKAAQPRMFDYFYQLRNKNKISQLIDIVDMTPLVHVSGMFGALRS
YVSLVAPLAWHPDNRNAVIMCDLSADMSPLIELDAQQLRTRLYTPKSELGDELPVPVKLV
HINKCPILAPEKTLRDSDAQRTGLDRDLCMQNLEILRKTPEIRNKLIELFSVAPEYENSD
DVDAQIYSGFFSTSDRSTMDIIRETSPQNLPALDLSFEDKRMKELFFRYKARNFPTILSY
EEQQRWLQHRRNYFSEARLTEYMQEIQYLLAEHQHDEKRCQQLKALVNYATELAS
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
ttgcaagacaataaaaaacaaccctcattttttattcatgactatgagactttcggcaaa
cgccccgcgcttgacaggccagcccagttcgcaggcgtgcggactgaccttgattttaat
atcatcgatgagcctgaagttttctattgtgctccttcagatgactatcttccgcaacct
gaagcggtgatgataacaggtattacaccgcaaatagcccttgctcaaggggttaatgaa
gctgagtttgcaaaacgtattcataaagcattcactgtcccgaacacttgtattatgggt
tataacaatattcgttttgatgatgaagtcacccgtaatattttttatcgcaatttttat
gacccctacgcatatagctggcagcaaggaaactcacgttgggatttactcgatgcatta
cgtgcttgttttgctttgcgccctgaagggattacttggcctgaaaatgacgatggtcta
ccgagtatgcgcctagaacatttaactaaagccaacggcgttgcccatgaaaatgcccat
gatgcaatgtctgatgtattagcaacaatcaatatggcaaaattactcaaagcagctcaa
ccccgtatgtttgattatttttaccagctgagaaataaaaataaaattagtcaattaatt
gatattgttgatatgactccccttgtccacgtttcaggtatgtttggtgcattgcgttct
tatgtcagtttagtcgccccactcgcatggcaccctgacaatcggaatgccgttattatg
tgcgatctatctgctgatatgtctccgttaattgagttagatgcacaacaattacgcacc
cgcctttacacgccaaaatctgaacttggtgatgaattgccagtccctgtaaaacttgtc
catatcaataaatgtccaattttagcgccagaaaaaacactgcgtgatagtgatgctcaa
cgaacagggctagatcgcgacctctgcatgcagaatttagaaatcctgcgtaaaacccca
gaaattcgcaataaattaattgaattattcagtgttgcgcctgaatatgaaaattctgat
gatgtggatgcacaaatctacagcggtttctttagtacttcagaccgttcaacgatggat
attattcgcgaaacatccccgcagaatttacctgctttagatttaagctttgaagataag
cgcatgaaagagctattttttcgctataaagcacgtaattttccaacgattttatcgtac
gaagagcagcagcgttggctgcaacaccgtcgaaattactttagtgaagctcgcctaaca
gaatatatgcaagaaattcaatatttattggcggaacatcaacacgatgaaaaacgttgc
caacaattaaaagccttagttaattacgcgacagaactcgccagttaa
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