Providencia heimbachae: NCTC12003_01670
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Entry
NCTC12003_01670 CDS
T05509
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
phei
Providencia heimbachae
Pathway
phei03030
DNA replication
phei03430
Mismatch repair
phei03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC12003_01670 (holB)
03430 Mismatch repair
NCTC12003_01670 (holB)
03440 Homologous recombination
NCTC12003_01670 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phei03032
]
NCTC12003_01670 (holB)
03400 DNA repair and recombination proteins [BR:
phei03400
]
NCTC12003_01670 (holB)
Enzymes [BR:
phei01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NCTC12003_01670 (holB)
DNA replication proteins [BR:
phei03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NCTC12003_01670 (holB)
DNA repair and recombination proteins [BR:
phei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NCTC12003_01670 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNApol3-delta_C
HolB_lid
Motif
Other DBs
NCBI-ProteinID:
SQH12955
LinkDB
All DBs
Position
1:1901836..1902828
Genome browser
AA seq
330 aa
AA seq
DB search
MNWYPWLNETYRQLIAAYQGGRGHHALLLHSLPGNGAQALCYGISRWLICQNKEGLKSCG
ECHSCRLMLAGTHPDYHVLETEKGKQTVSVDAVRKLTETLSSHSQQSGAKVVYIPNTEAL
TDAAANALLKTLEEPSKETYFLLGCEKQENLLATLRSRCLTHYLPAPDQQIALYWLQKNV
PNVNLDNAVTALMLCQGAPIAAATLLEPGNWHKRGTLCNELEIALQCADMLKLLPALNTD
NCPELIGWLLGLFADAIKLQQNAGQFCVNHDQVPRVTLLATTMTSSQLIKAYEQWQNCRY
QLLTVPALNQELILTNQLLQWEALIASPSL
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgaattggtacccttggctaaatgagacatatcgccaattaatcgcggcatatcaaggt
ggtcgtgggcatcatgcattgctattgcactctttaccgggtaatggtgctcaagcactt
tgttatgggatcagccgttggttaatctgtcaaaataaagagggcttgaaaagctgcggt
gaatgtcatagctgccgtctaatgctcgcaggtacacatccggactaccatgttttggaa
actgaaaagggtaagcagacggttagcgttgatgcggttagaaaactaaccgaaacgttg
agtagccattcgcagcaaagtggtgcaaaagttgtttatatacccaatactgaagcatta
acggatgcggcggcaaatgcactgcttaaaacgttagaagaaccctcaaaagagacctat
tttctcctcgggtgtgaaaagcaagaaaacctattagcgactttacgcagccgttgttta
acgcattatttaccagcgccagaccaacaaatcgcgctatactggctacaaaaaaacgtt
cctaacgtaaacttagataatgccgttactgcgttgatgctgtgtcaaggtgcgcctatt
gctgcggcaacattgctcgaaccgggtaattggcataaacgaggtacactgtgtaatgaa
cttgaaattgcactgcaatgcgcagatatgctgaagttactacccgctttaaatacggat
aattgccctgaattaatagggtggttattagggttatttgcggatgcaataaaattacag
caaaatgcagggcaattttgtgttaatcatgatcaagtaccacgtgtcaccttgttagcg
acgacgatgaccagctcacagttaattaaagcctatgagcaatggcaaaattgccgttat
caattgttaactgtaccagcacttaatcaggaattgatcctgacaaatcagttattacaa
tgggaagcattaattgcttcaccttcattatag
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