Providencia heimbachae: NCTC12003_01929
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Entry
NCTC12003_01929 CDS
T05509
Symbol
topA_1
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
phei
Providencia heimbachae
Brite
KEGG Orthology (KO) [BR:
phei00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phei03032
]
NCTC12003_01929 (topA_1)
03400 DNA repair and recombination proteins [BR:
phei03400
]
NCTC12003_01929 (topA_1)
Enzymes [BR:
phei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NCTC12003_01929 (topA_1)
DNA replication proteins [BR:
phei03032
]
Prokaryotic type
DNA Topoisomerases
NCTC12003_01929 (topA_1)
DNA repair and recombination proteins [BR:
phei03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NCTC12003_01929 (topA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Zn_ribbon_Top1
Toprim
Zn_ribbon_recom
DUF2399
Motif
Other DBs
NCBI-ProteinID:
SQH13209
LinkDB
All DBs
Position
1:2160923..2163529
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AA seq
868 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGSGYVVKSSVGHIRDLPKSGSSSQTGSQKSTGSSTDKAK
KVKKDPQQALVKRMGIDPYHGWDANYQILPGKEKVVSELQTLAADADHIYLATDLDREGE
AIAWHLREVIGGDDSRFSRVVFNEITKNAITQAFETPGELNIDRVNAQQARRFMDRVVGY
MVSPLLWKKVARGLSAGRVQSVAVRLIVEREREIKAFVPVEYWELHADLSDKGAINLRME
VASQSGKAFKPVTKAQTEAAVKLLEKARFEVIDREDKPTSSKPSAPFITSTLQQAASTRL
GFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDALSMVRDYINDNFGAKYLPKDAIAYSS
KDNSQEAHEAIRPSSVDVLTETLKDMENDAKRLYQLIWNQFVACQMTPAKYDSTTLIVKA
GDFELKAKGRTLRFDGWTKVMPALRKNDDDKTLPPIQVGSELSLLELLPTQHFTKPPARF
SEASLVKELEKRGIGRPSTYAAIISTIQDRGYVKVDNRRFYAEKMGEIVTDRLEENFNDL
MNYDFTARMENQLDHVANHEAEWKAVLDEFFSDFSKQLEVAEKDPEEGGMRTNPMVITSI
VCPDCERHMGIRTASTGVFLGCSGYALPPKERCKKTINLIPEDEVLNILEGEDAETNALR
AKRRCPKCGTAMDSYLIDNQRKLHVCGNNPACEGYEIEEGEFRIKGYDGPVIECEKCGSE
MHLKMGRFGKYMGCTNDECKNTRKILRSGEIAPPKEDPVPLPELACEKSDAYFVLRDGAA
GIFLAANTFPKSRETRAPLVEELQRFKDRLPEKFAYLAEAPAKDTEGNPTVVRFSRKTKQ
QYVSSEKDGKATGWSAFYVDGKWQVKEK
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctcttgtaatagtggagtccccggcaaaagccaagacgattaataagtat
cttggtagtggctacgttgtcaaaagcagcgtcggccacattcgtgatctgccgaaaagc
ggctctagctcacaaaccggctcacaaaagagtacaggctcatctaccgataaagcaaag
aaggtaaaaaaagatcctcagcaagcgttagttaagcgcatggggattgatccttaccat
ggttgggacgcgaattatcaaattctacccggtaaggaaaaagtggtgtctgaattacag
acgttagcagcggatgcagaccacatttatctcgcaacggatttggaccgcgaaggagaa
gccattgcttggcatttacgcgaagtaattggtggtgatgactcacgttttagccgtgtc
gtatttaacgaaataaccaaaaatgcgattactcaagcttttgaaacgcctggcgaatta
aatatcgacagggttaacgcacagcaagcgcgtcgctttatggatcgtgttgtgggctac
atggtttcgccactgttgtggaaaaaagtcgcaagagggctttctgcgggacgtgttcaa
tccgttgcggttagattgattgttgagcgtgaacgcgaaatcaaagcatttgttcctgtt
gaatattgggaattgcatgcggatttatctgataaaggcgccatcaacttacgtatggaa
gtcgcgtcacaatcgggtaaagcatttaagcctgtaacgaaagcacaaactgaagctgca
gttaaattacttgaaaaagcgcgctttgaggtgattgaccgagaagacaagccgacatca
agtaaacctagcgcaccttttatcacctcaacactacagcaagcggcaagtacgcgtctt
ggttttggtgtgaaaaaaaccatgatgatggctcagcgtctttacgaagcgggttacatt
acttatatgcgtactgactcaactaacttgagccaagatgcattgagcatggtacgtgac
tatattaatgataactttggtgcgaaatatttacctaaagatgccattgcttatagcagt
aaagataattctcaagaagcgcatgaagctatccgtccttcgagtgttgatgtattaact
gaaacacttaaagatatggaaaatgatgctaagcgattatatcagctgatttggaaccaa
tttgtggcgtgtcaaatgacaccagcaaaatatgattcaaccacgctgatagtaaaagcg
ggcgattttgagcttaaagcaaaagggcgtacattgcgttttgatggttggactaaagtc
atgccagcattgcgtaaaaatgatgatgataagaccttgccacctattcaagttggttct
gaattatccttgttagaattactgccaactcagcattttactaagccgccagcacgcttt
agtgaagcttctttagttaaggaattagaaaaacggggtatcggccgaccatcgacatat
gctgctatcatttcgactatccaagatagaggatatgtcaaagttgataaccgccgcttt
tatgccgaaaaaatgggtgaaattgttaccgatcgattggaagaaaatttcaacgatcta
atgaactatgatttcactgcccgtatggaaaatcagctcgaccatgttgctaatcatgaa
gcagaatggaaagccgtgttagatgaattcttctcagactttagtaagcaattagaagtt
gcagaaaaagatccagaagaaggcggtatgcgtactaatccaatggtgatcacctcaatc
gtctgtcctgattgtgaacgccatatgggaattcgtaccgcatctacaggtgtgtttctg
ggttgttctggttatgctttacccccaaaagagcgttgtaaaaagacgattaatctgatc
cctgaagatgaagttcttaacattcttgaaggggaagatgcggaaaccaatgctctgaga
gctaaacgtcgctgcccgaaatgtggtactgcaatggatagctatttgattgataaccaa
cgtaaattacatgtatgtggtaacaacccagcatgtgaaggttatgaaatcgaagaaggt
gaattccgtattaaaggttacgatggcccggttattgaatgcgaaaaatgtggttctgaa
atgcaccttaaaatggggcgttttggtaaatacatgggttgtaccaatgatgagtgcaaa
aatacgcgtaagattttaagaagtggtgaaatcgcaccaccgaaagaagatcctgtaccg
ttgcctgaattagcctgtgaaaaatctgatgcgtactttgttctacgtgatggtgcagct
ggcattttccttgccgcaaatacgttccctaaatcaagagaaacgagagctccattagtc
gaagaattgcagcgatttaaagatcgcttacctgaaaagtttgcttatttagctgaagct
ccagctaaagataccgagggtaatccaacagttgttcgttttagccgcaagactaaacag
caatatgtgtcatctgaaaaagatggcaaagcaacgggttggagcgctttctatgttgat
ggtaaatggcaagtgaaagagaagtaa
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