Providencia heimbachae: NCTC12003_01946
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Entry
NCTC12003_01946 CDS
T05509
Symbol
rnb
Name
(GenBank) Exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
phei
Providencia heimbachae
Brite
KEGG Orthology (KO) [BR:
phei00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
phei03016
]
NCTC12003_01946 (rnb)
Enzymes [BR:
phei01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NCTC12003_01946 (rnb)
Transfer RNA biogenesis [BR:
phei03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NCTC12003_01946 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
ODP
Motif
Other DBs
NCBI-ProteinID:
SQH13226
LinkDB
All DBs
Position
1:complement(2178637..2180580)
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AA seq
647 aa
AA seq
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MFQDNPLLAQLKQKLHAQTPRVEGIVKGTEKGFGFLEVDGQKSYFIPPPQMKKVMHGDRV
IASIHTDKDREFVEPEELVEPFLDRFVGKIQKKDNDNRLFVIPDHPLLRDAISCRPINEI
THQFQQDDWVVAQMRRHPLKGDKGFYADITEYITEGNDHFAPWWVTLRRHQLDRDEPQMV
ESERDDQGIERVDLTDFHFVTIDNATTEDMDDALYVEKTTEGTLKLYIAIADPTSYIREG
SELDKLALSRSYTNYLPGFNIPMLPRELSDNLCSLRPNERRPALVCTALIEEDGSIAENI
EFFSAWVESKSKLVYEEVSDWLENTGSWQPTNETDKQQILLLKEMADKRLQWREANALVF
KDRPDYRFVLDENGQVLDIVSESRRSANRIVEEAMITSNLCAATVLKNKLGFGVFNVHMG
FDPLQIDQVVQTLKDHGIETTSESLLSLEGFRQLRRKLDSQPTQFLDSRIRRYQTFAEVK
ADPGPHFGLGFDAYATWTSPIRKYTDIVNHRLLKSIIAGNPSNNKPSDELSLKLAERRRA
NRMAERDVGDWLYSRYLKPFEGTDKKFPAEVIDITRGGIRVRLTDNGAVAFIPAPFLHSV
RDEVQCSQETGCVLIKGEQAYQLNDIIDVNIAEVRMETRNIVARPAV
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagacaacccactactcgcacagcttaaacaaaaattgcatgcccaaacacct
cgtgttgaaggtattgttaaaggaacagaaaaaggtttcggctttttagaagttgatgga
caaaaaagctactttatcccgccaccacaaatgaaaaaagtgatgcacggagatagagtg
attgcctccattcataccgataaagaccgtgaatttgtcgaaccggaagaacttgtagaa
ccttttcttgaccgttttgttggcaaaattcaaaaaaaagataacgataaccggttattt
gtcattcccgaccatcctttattaagagatgctatttcttgccgcccaattaatgaaatt
acacatcaatttcagcaagacgattgggttgttgcacaaatgcgtcgtcatccgctaaaa
ggcgataaaggcttttatgctgatatcactgaatatattacagagggtaatgaccatttt
gcaccttggtgggtaacgttacgccgtcaccaattggatcgcgacgaacctcaaatggtg
gaaagtgaacgcgatgaccaaggcattgaacgagttgaccttacagactttcactttgtg
actatcgacaacgcaaccactgaagatatggacgatgcgctgtatgtagaaaaaaccact
gaaggtacgttgaaactgtatattgccattgcggatccaaccagctatatccgtgaaggt
agtgaactcgacaaactggctctttcccgttcttatactaattatctgccgggtttcaac
attccaatgttgcctcgtgaattatccgataatctttgctcactacgtccaaatgaacgt
cgccctgcgttagtctgtaccgcattaattgaagaagatggctcgattgcagagaatatc
gaattcttcagtgcttgggttgaatcaaaatctaaactggtttatgaagaagtctctgat
tggttagaaaataccggcagttggcagcccaccaatgagaccgataaacagcaaatttta
ttattgaaagaaatggcagataaacgcctgcaatggcgtgaagccaatgctttggtgttt
aaagatagaccagactatcgctttgttttggatgaaaatgggcaagtattagatatcgtt
tcagagagtcgtcgcagtgctaatcgtatcgtagaagaagcgatgatcacctcaaacctt
tgcgctgctacagtactgaaaaacaaactgggtttcggcgtatttaacgtgcatatggga
tttgacccattacaaattgatcaagtggtacaaacactgaaagatcatggtattgaaaca
acatctgaatcgttgctctctctcgaagggttccgccaattacgtcgtaaattagactca
caaccaacgcaattccttgatagccgtattcgccgctatcaaacctttgcggaagtaaaa
gccgatcctggcccgcattttggtttaggttttgatgcttatgcaacgtggacatcccct
atccgtaaatatacggatatcgtcaatcatcgtttattaaagtcgatcattgcgggtaat
ccatcaaacaacaagcccagcgatgagctctctttaaaattggctgagcgtcgtcgagcc
aaccgcatggccgaaagagacgtcggcgattggctgtattctcgctacttgaaaccattt
gaaggtaccgataaaaaattccctgcggaagtgattgatattacccgtggtggtattcgc
gtcaggttaaccgataatggcgctgtcgcatttatcccagcaccattcctacacagtgtg
cgtgatgaagttcaatgtagccaagaaacaggctgtgttttaattaaaggcgaacaagct
tatcagcttaacgatattattgacgtgaacattgcagaagttcgcatggaaacacgtaat
atcgttgcacgccctgctgtataa
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