Providencia heimbachae: NCTC12003_02123
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Entry
NCTC12003_02123 CDS
T05509
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
phei
Providencia heimbachae
Brite
KEGG Orthology (KO) [BR:
phei00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phei03019
]
NCTC12003_02123
Enzymes [BR:
phei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NCTC12003_02123
Messenger RNA biogenesis [BR:
phei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NCTC12003_02123
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
nSTAND3
WHD_HA2
AAA_19
AAA_22
ResIII
NACHT
nSTAND_NTPase5
PhoH
NTPase_1
AAA_25
T2SSE
Lsm_interact
SLFN-g3_helicase
ABC_tran
Zeta_toxin
DUF6145
Motif
Other DBs
NCBI-ProteinID:
SQH13403
LinkDB
All DBs
Position
1:complement(2367440..2371360)
Genome browser
AA seq
1306 aa
AA seq
DB search
MKNKDLKLKSILAALEADIGQTSLRDQFFLKKRIYGIAKIQDEKSRTAILDVIKADIETA
KQKVATKRLNPPTIRYPDNLPVSQKKDVILDAIKKHQVVIIAGETGSGKTTQIPKICLEL
GRGIQGFIGHTQPRRLAARSVATRLAQELECELGQNVGYKVRFSDQVGENTQVKLMTDGI
LLAELQNDKLLLQYDTIIIDEAHERSLNIDFILGYLRQLLPKRPDLKIIITSATIDPERF
SRHFNHAPIVEVSGRTYPVEVRYRPVMGDDNDNERDQIDGIIDAVNELSVEGNGDILIFM
SGEREIRDTADALSKLQLRHTEILPLFARLSNSEQNRIFHPHGGRRIILSTNVAETSLTV
PGIKYVIDTGYARISRYSYRTKVQRLPVEPISQASANQRKGRCGRVSDGICIRLYSEDDF
LSRPEFTDPEILRTNLASVILQMTSIGLGDIAAFPFVEAPDKRNIQDGVKLLEELGAVQP
HKLAERGYQLTEIGRQLAQLPVDPRLARMVIEARKHGAVREAMVIVSALSIQDPRERPLE
KQQASDEKHRRFHDKQSDFLAFLNLWNYLKEQQKTLSNAQFRKMCRQDFLNYLRIREWQD
LYTQLRQVVKEQGFAINSVEADFRSIHVSLLAGLLSHVGQKDADKPEFTGARNARFTIFP
GSGLFKKPPKWAMVAELVETSKLWGRIAASIDPEWIEPLAEHLTKHNYSEPHWSKSEGAV
MASEKVTLYGLPIVASRQVNYGNIDPLLCRELFIRHALVEGDWTTRHAFFKENLKLLSEI
EDLEHKSRRRDILVDDETLFAFYDQRIPNDVISSRHFDNWWKTVSKQQSDLLNFEKNMLI
KDDAANVSALDYPNYWYQGDLKFRLSYQFEPGTDADGVTVHIPLAILNQVQNTGFDWQVP
GLRHELIVALIKSLPKPIRRNFVPAPNYASAFLERVPVPEGSVLDKLERELRRMTGVSVD
RDSWQLEQLPVHLKMTYRVIGDKNKTIAEGQDLDALKNSLKEKVQETLSEVVDDGIEQNG
LHIWSFGELPQRYEQKRGGYSVKAYPALVDEKTSVGIRVFETELEQQQAMWAGVRRLLLL
NIPSPIKYLHEKLPNKSKLGLYFNPYGKVLELIDDCIACGIDQLISTYGGPVWNEEQFEK
LKEYARAELNDAVVNIAKQVEQILTSVFAINKRLKGRVDFSMALALSDLKAQMSGLVFKG
FVTTHGWKRLPDILRYLNGIERRLEKLAIDPNRDRAQMSKVEHVQNMWQQWMSKLTPLQK
TLPEVQEVRWMIEELRVSLFAQQLGTPYPISDKRIIQTMENITAQL
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaataaggatttaaaattgaaatccatactggcagcattagaagctgatattgga
caaacgtcattacgcgatcaattttttttaaaaaaaaggatctatggtattgctaagata
caagatgaaaagtctcgtacagcaattctggatgtgattaaagccgatatcgaaacggcc
aaacaaaaggtagcgactaagcgcctcaatccgccgacaattcgttatcctgataattta
ccggtaagtcagaaaaaagacgttattttagatgcgattaaaaagcatcaggttgtcatt
attgcaggcgaaacaggttctggtaagacaacccaaatacctaaaatttgtttggagttg
ggtcgggggatccaaggattcatcggtcatacgcaaccaagaagattggctgctcgttct
gttgctacccgtcttgcccaagaattagaatgcgaattaggacaaaatgtaggatataaa
gttcgttttagtgatcaagttggcgaaaatacgcaagtcaaattgatgactgatggtatt
ttattagcagaattacagaacgataaattacttctgcagtacgatacaattattatcgat
gaagcgcatgaacgaagcttaaatatcgattttatattgggttatttacgtcaattgctg
cccaaaagacccgatttaaaaattattattacctctgcgacaattgatccggaacgtttt
tctcgtcattttaaccatgctccaattgttgaggtttcaggccgtacttaccctgtggag
gttcgttaccgcccagtcatgggagatgataacgacaatgaacgagatcaaatagacggg
atcattgatgccgttaatgaactatccgtggaaggaaatggcgatattttgattttcatg
agcggtgagcgagaaattcgtgatacagctgatgcactttcaaaattacaacttagacat
actgaaattttacctctgtttgctaggctttcaaatagtgaacaaaatcgtatttttcat
ccccatggtggtcggcgaattatcctttccactaacgtggcagaaacatcattaactgtt
ccagggatcaaatatgtcattgatactggttatgcaagaattagccgttacagttaccga
actaaagtccaacgattgcctgtagagcctatttcacaagcctctgcaaatcaacgaaaa
gggcgttgtggccgtgtttctgacggtatttgtattcgtttatattctgaggatgatttt
ttatcacgcccagaatttaccgatcctgaaattttaagaacaaatttagcctccgttatt
ttacagatgacatcgatcggattaggcgatattgcagcctttccttttgtggaagcaccc
gataaacgtaatattcaagatggtgttaaattacttgaggagctgggggcagttcaacct
cataagcttgctgaacgtggatatcaattaaccgaaattggccgccaattagctcaactt
ccggttgatccaagacttgctcgaatggttattgaagcaagaaaacatggtgcagtacgt
gaagcgatggtgatcgtttcggcattgtcaattcaagatccaagagaaagacccttagag
aaacagcaagcctccgatgaaaagcatcgacgttttcatgataaacaatcggatttcctt
gcttttctaaacttatggaactatttgaaagagcagcaaaaaacactgtcaaatgcacag
tttagaaaaatgtgtcgccaagattttctgaattatcttcgtattcgtgaatggcaagat
ttgtatactcagcttagacaagttgtaaaagaacaagggtttgcgattaatagtgtggaa
gctgattttcgtagtattcatgtatcgttacttgctggattactttctcatgtcggtcaa
aaagacgcagataaacctgaatttaccggggctaggaatgctcgctttacaatctttcct
ggctcgggtctatttaaaaaaccgcctaaatgggcaatggtcgctgaacttgttgaaaca
tcaaaactatggggcagaattgccgcttcaattgaccctgaatggattgagccattagcg
gaacaccttactaaacacaattacagcgagcctcattggtcaaaatcggaaggcgctgtt
atggcttcagagaaggtgacactctatggtttgccaattgttgcttcacgtcaggttaat
tatggcaatatagacccgttattatgccgtgaattatttattcgccatgctttggttgaa
ggtgattggacaacccgacatgcattctttaaagaaaatctgaagttattgtccgagatt
gaagatttagaacataaatcgagacgccgagatatacttgttgatgatgaaacactgttt
gctttttatgatcaacgaattccgaatgatgttatttcatctcgtcattttgataattgg
tggaagacggtatctaagcagcaatctgaccttcttaatttcgaaaaaaatatgcttatt
aaggatgatgctgcgaatgtatcagcccttgattatcctaactattggtatcaaggtgat
ttaaaattccgccttagttatcaatttgaaccgggtactgatgctgatggtgtcacggta
catattccattagcgattttaaatcaggtccaaaatacgggtttcgactggcaagttccc
ggattacggcatgaattaattgtagctttaattaagtcattacctaaaccgattcgacgt
aatttcgtccctgcacctaattatgcatctgcatttcttgaacgcgtgcctgtacctgaa
ggtagcgttctcgataagctcgaacgtgaactgcgccggatgacaggcgtttcggttgat
agagattcatggcaacttgagcaactaccggtgcatttaaaaatgacgtatcgggtcatt
ggcgataaaaataaaactattgcggaagggcaagatctagatgcattaaaaaatagccta
aaagaaaaagtgcaagaaacactttcagaagttgtagatgatggtattgaacaaaacgga
ttacatatttggagctttggcgaattacctcaacgttacgaacaaaaacgcggtggatat
tcagttaaagcttatcctgcattagtcgatgaaaaaacgagtgtaggcattcgtgtattt
gaaactgagcttgaacaacaacaagccatgtgggctggggtacgtagattattactattg
aatatcccatctccaattaaatatttacatgaaaaactacccaataaatcgaaacttggg
ctctactttaatccatatggcaaggttttagagttaattgatgactgtattgcatgcggt
atcgatcaattaatttcaacttatggtgggccagtttggaatgaagaacaatttgaaaaa
ttaaaagagtatgcacgcgctgaattaaatgatgcggttgttaatattgctaagcaagtt
gagcaaattttaacatcagtttttgccataaataaaaggttaaaggggcgtgtagatttt
tctatggcattagcgctatcagacttaaaagcacaaatgtccggtttagtatttaaaggg
tttgtaacgactcatggttggaaacgcttacctgatatcttacgttatttgaatggcata
gaacgtagattagagaaattagcaattgatccaaatagagaccgcgcacagatgagtaag
gtagaacatgtacaaaatatgtggcagcagtggatgtcaaaattgacgccattacagaaa
acattacctgaagtgcaagaagttcgttggatgattgaagaattacgagtgagtttattt
gcacagcaattagggacgccatatccaatttctgataaacgaataattcaaacgatggaa
aatatcactgcacaattgtaa
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