Providencia heimbachae: NCTC12003_02878
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Entry
NCTC12003_02878 CDS
T05509
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase rhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
phei
Providencia heimbachae
Pathway
phei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12003_02878 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phei03019
]
NCTC12003_02878 (rhlE)
Enzymes [BR:
phei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC12003_02878 (rhlE)
Messenger RNA biogenesis [BR:
phei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC12003_02878 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
UTP25_NTPase-like
P-loop_SecA
Cullin_binding
Motif
Other DBs
NCBI-ProteinID:
SQH14133
LinkDB
All DBs
Position
1:complement(3150983..3152335)
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AA seq
450 aa
AA seq
DB search
MTNFSDLALNEEILLAINELGYETPTPIQQQAIPAVLAGHDLLASAQTGTGKTAGFTLPI
LQKLIETPRGKNRRPVRALILTPTRELAAQVAENVKEYSRHLNVRSLVIFGGVSINPQMM
KLRSGVEILIATPGRLLDLEHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVINKLPKK
RQNLLFSATFSDEIKQLAGKLLTNPVTIEVARRNSASEQIAQFVHFVDKKRKAELLSFMI
GRENWQQVLVFTRTKHGANRLAEHLNKDGIKAAAIHGNKSQGARTRALADFKSGGIRVLV
ATDIAARGLDIEQLPYVVNYELPNIAEDYVHRIGRTGRAEATGKAISLVCVDEHKLLKDI
EKLLKKSIPVMETEGFDPDPSIKAEPIQKTPQRGDRRPSERRPNERSGHGDKGNNRPRRT
SAPAAKGKSESSGSPWKNAQSKVRQGRGEG
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
ttgactaatttttcagacctcgcattaaacgaggaaattttgcttgccattaatgagtta
ggctatgaaacacctacgcctatccaacaacaagctatccctgcggtacttgcaggtcat
gacttgctcgcgagcgcacaaacaggtaccggtaaaaccgctggctttacgttacctatt
ttgcaaaaactcattgaaactccacgtggtaaaaatcgccgacccgttcgtgcactgatt
ttaacccctactcgtgagttggcagctcaagtagctgaaaacgtgaaagaatatagccgc
catttaaatgttcgttcattggttatttttggcggcgttagcattaatccgcagatgatg
aaattgcgcagtggtgttgaaattcttatcgcaacgccagggcgtttactcgatttagag
caccaaaatgcggttgatctttctcaagtggaaatactagtacttgatgaagcggatcgc
atgttggacatgggttttattcatgatatccgtcgtgttatcaataaattgcctaaaaaa
cgccaaaatttacttttttcagccacattttctgatgaaatcaaacagctggctggcaag
ttgcttaccaatccggtaacgattgaagtagcgcgtcgtaattcagcatcagaacaaata
gcgcaatttgttcattttgttgataaaaagcgtaaagctgaacttttatctttcatgatt
ggccgtgaaaattggcagcaagtgctggtatttacacgtacaaagcatggtgctaaccga
ttagcagaacatttgaataaagatggcattaaagccgccgctattcatggtaataagagt
cagggggcacgtacccgcgcacttgctgactttaaatcaggcggcatccgtgttttagtg
gcgacagatatcgctgctcgcggccttgatattgagcagcttccatatgtggtcaactac
gagttaccaaatatcgcagaagattatgttcaccgtattggtcgtactggccgtgcggaa
gcgacaggaaaagcgatttctttagtgtgtgttgatgaacacaaattactgaaagacatt
gaaaaattgctaaaaaaatcaattccagtaatggaaactgaaggattcgatcctgatcct
tcgattaaagccgaaccgatccaaaaaacgccacaacgtggtgatagacgtccatccgag
cgacgccctaatgaaagaagtggtcacggtgataaaggcaataatcgtcctcgtcgtacg
agtgctccagccgcgaaaggaaaatctgagtcatcaggttcgccttggaaaaatgcgcaa
agtaaagtaagacaaggacgtggtgaaggctaa
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